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AT2G38560 - ( TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA binding / RNA polymerase II transcription elongation factor/ transcription factor )

105 Proteins interacs with AT2G38560

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G49340	Predicted Synthetic Lethality	FSW = 0.0242	Class C: nucleus	ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE
AT2G31660	Predicted Affinity Capture-Western interaction prediction	FSW = 0.0153	Class C: nucleus	SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER
AT4G28860	Predicted Affinity Capture-MS	FSW = 0.0049	Class C: nucleus	CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G21700	Predicted Phenotypic Enhancement	FSW = 0.0692	Class C: nucleus	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT5G19310	Predicted Synthetic Lethality	FSW = 0.0689	Class C: nucleus	HOMEOTIC GENE REGULATOR PUTATIVE
AT3G54610	Predicted Affinity Capture-Western	FSW = 0.1200	Class C: nucleus	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G12810	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.3271	Class C: nucleus	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G16980	Predicted interologs mapping Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement Enriched domain pair Co-expression	FSW = 0.2332	Class C: nucleus	NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G35910	Predicted Synthetic Rescue	FSW = 0.1323	Class C: nucleus	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT3G13445	Predicted Synthetic Lethality	FSW = 0.0392	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G09860	Predicted Synthetic Rescue	FSW = 0.1114	Class C: nucleus	NUCLEAR MATRIX PROTEIN-RELATED
AT1G03190	Predicted Phenotypic Enhancement	FSW = 0.1356	Class C: nucleus	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G63210	Predicted synthetic growth defect	FSW = 0.1254	Class C: nucleus	RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR
AT4G20810	Predicted in vitro	FSW = 0.0306	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT1G65440	Predicted synthetic growth defect	FSW = 0.0979	Class C: nucleus	GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT2G15430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1947	Class C: nucleus	NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G36740	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement	FSW = 0.3940	Class C: nucleus	SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT1G05055	Predicted Phenotypic Enhancement	FSW = 0.0766	Class C: nucleus	GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G18760	Predicted Phenotypic Enhancement	FSW = 0.1215	Class C: nucleus	CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G19210	Predicted Phenotypic Enhancement	FSW = 0.0950	Class C: nucleus	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G08350	Predicted Affinity Capture-MS Phenotypic Enhancement synthetic growth defect	FSW = 0.1528	Class C: nucleus	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT5G25150	Predicted Phenotypic Enhancement	FSW = 0.0536	Class C: nucleus	TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT2G34210	Predicted Affinity Capture-MS synthetic growth defect	FSW = 0.1604	Class C: nucleus	STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT1G55520	Predicted Synthetic Lethality	FSW = 0.0746	Class C: nucleus	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT2G43810	Predicted Phenotypic Enhancement	FSW = 0.1483	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G19120	Predicted Phenotypic Enhancement	FSW = 0.1388	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870	Predicted Phenotypic Enhancement	FSW = 0.1137	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G09920	Predicted Synthetic Lethality	FSW = 0.1952	Class C: nucleus	NRPB4 DNA-DIRECTED RNA POLYMERASE
AT3G06010	Predicted Synthetic Lethality	FSW = 0.0781	Class C: nucleus	ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G63110	Predicted Phenotypic Enhancement	FSW = 0.1636	Unknown	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT4G35800	Predicted Synthetic Lethality Phenotypic Enhancement interologs mapping Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-crystal Structure Synthetic Lethality interaction prediction Enriched domain pair Co-expression	FSW = 0.2732	Unknown	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G58230	Predicted Phenotypic Enhancement	FSW = 0.0979	Unknown	MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT2G45300	Predicted Phenotypic Suppression	FSW = 0.0348	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT2G43030	Predicted Phenotypic Enhancement	FSW = 0.0061	Unknown	RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT1G12520	Predicted Synthetic Lethality	FSW = 0.1640	Unknown	ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT1G11890	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1978	Unknown	SEC22 TRANSPORTER
AT5G52640	Predicted synthetic growth defect	FSW = 0.0533	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G01310	Predicted Synthetic Lethality	FSW = 0.0360	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT3G43810	Predicted interaction prediction	FSW = 0.0041	Unknown	CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT4G32760	Predicted Synthetic Lethality	FSW = 0.0157	Unknown	PROTEIN TRANSPORTER
AT2G18040	Predicted Phenotypic Enhancement	FSW = 0.1063	Unknown	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G44950	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2889	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G75510	Predicted Co-purification Affinity Capture-MS Phenotypic Enhancement	FSW = 0.3218	Unknown	TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT5G66020	Predicted Phenotypic Enhancement	FSW = 0.0661	Unknown	ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT2G31970	Predicted Phenotypic Enhancement	FSW = 0.1061	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT3G52090	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1679	Unknown	NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G19910	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement Phenotypic Enhancement Synthetic Lethality	FSW = 0.3315	Unknown	SOH1 FAMILY PROTEIN
AT4G21710	Predicted Synthetic Lethality Phenotypic Enhancement Affinity Capture-MS interaction prediction Enriched domain pair Co-expression	FSW = 0.1800	Unknown	NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G15400	Predicted Affinity Capture-MS	FSW = 0.1499	Unknown	NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G28030	Predicted Phenotypic Enhancement	FSW = 0.0821	Unknown	UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT5G54260	Predicted Phenotypic Enhancement	FSW = 0.1755	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G20050	Predicted Reconstituted Complex interologs mapping interologs mapping Reconstituted Complex Reconstituted Complex interologs mapping	FSW = 0.0211	Unknown	ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT5G20850	Predicted Phenotypic Enhancement	FSW = 0.0802	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT5G44280	Predicted two hybrid	FSW = 0.0096	Unknown	RING1A (RING 1A) PROTEIN BINDING / ZINC ION BINDING
AT5G58003	Predicted in vitro Synthetic Lethality	FSW = 0.1972	Unknown	CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT1G52740	Predicted Synthetic Lethality synthetic growth defect synthetic growth defect Phenotypic Enhancement	FSW = 0.3287	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G66740	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1883	Unknown	SGA2
AT1G79730	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement Co-expression	FSW = 0.2419	Unknown	ELF7 (EARLY FLOWERING 7)
AT2G18600	Predicted Synthetic Lethality	FSW = 0.0476	Unknown	RUB1-CONJUGATING ENZYME PUTATIVE
AT1G04950	Predicted Phenotypic Enhancement	FSW = 0.0918	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G06790	Predicted Phenotypic Enhancement	FSW = 0.0123	Unknown	RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G08780	Predicted Phenotypic Enhancement	FSW = 0.0976	Unknown	AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29990	Predicted Phenotypic Enhancement	FSW = 0.0916	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G32130	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.2885	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G50490	Predicted Phenotypic Enhancement	FSW = 0.0206	Unknown	UBC20 (UBIQUITIN-CONJUGATING ENZYME 20) UBIQUITIN-PROTEIN LIGASE
AT1G59890	Predicted Phenotypic Enhancement	FSW = 0.2011	Unknown	SNL5 (SIN3-LIKE 5)
AT1G61040	Predicted Synthetic Lethality	FSW = 0.2799	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G72680	Predicted Affinity Capture-MS	FSW = 0.0188	Unknown	CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT2G02760	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1952	Unknown	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT3G15460	Predicted two hybrid Reconstituted Complex interologs mapping two hybrid interologs mapping Reconstituted Complex interologs mapping Synthetic Lethality	FSW = 0.0079	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G18520	Predicted Phenotypic Enhancement	FSW = 0.1627	Unknown	HDA15 HISTONE DEACETYLASE
AT3G21060	Predicted Synthetic Lethality	FSW = 0.1871	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22142	Predicted Phenotypic Suppression	FSW = 0.1352	Unknown	STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22320	Predicted Affinity Capture-MS Affinity Capture-MS synthetic growth defect	FSW = 0.1654	Unknown	NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G22590	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.3022	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G42660	Predicted Phenotypic Enhancement	FSW = 0.2086	Unknown	NUCLEOTIDE BINDING
AT3G58560	Predicted Synthetic Lethality	FSW = 0.2477	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G04700	Predicted Reconstituted Complex Reconstituted Complex interologs mapping	FSW = 0.0076	Unknown	CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G22140	Predicted Phenotypic Enhancement	FSW = 0.1462	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G10270	Predicted Synthetic Lethality	FSW = 0.2373	Unknown	CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G23290	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1045	Unknown	PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G43500	Predicted Phenotypic Suppression	FSW = 0.1106	Unknown	ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45600	Predicted Phenotypic Enhancement	FSW = 0.2152	Unknown	GAS41 PROTEIN BINDING
AT5G46030	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2082	Unknown	UNKNOWN PROTEIN
AT5G48640	Predicted Phenotypic Suppression	FSW = 0.1375	Unknown	CYCLIN FAMILY PROTEIN
AT5G49510	Predicted Phenotypic Enhancement	FSW = 0.0963	Unknown	PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G58410	Predicted Phenotypic Enhancement	FSW = 0.1225	Unknown	BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G61150	Predicted Phenotypic Enhancement	FSW = 0.2776	Unknown	VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G63610	Predicted Affinity Capture-Western Phenotypic Suppression	FSW = 0.1862	Unknown	CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G63670	Predicted Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement synthetic growth defect	FSW = 0.3682	Unknown	SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT2G43790	Predicted Affinity Capture-Western	FSW = 0.0470	Unknown	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT2G44150	Predicted Phenotypic Enhancement	FSW = 0.3309	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G01090	Predicted Phenotypic Enhancement	FSW = 0.0786	Unknown	AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G22480	Predicted Phenotypic Enhancement	FSW = 0.0971	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G62040	Predicted interologs mapping	FSW = 0.0093	Unknown	CATALYTIC/ HYDROLASE
AT5G09620	Predicted Phenotypic Enhancement	FSW = 0.0347	Unknown	OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN
AT5G13780	Predicted Synthetic Lethality	FSW = 0.1573	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G15070	Predicted Synthetic Lethality	FSW = 0.0197	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G08565	Predicted Phenotypic Enhancement Phenotypic Enhancement synthetic growth defect	FSW = 0.3132	Unknown	POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G55255	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1334	Unknown	POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G14400	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1164	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G49660	Predicted Synthetic Lethality	FSW = 0.1764	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G30890	Predicted Synthetic Lethality Co-expression	FSW = 0.0495	Unknown	UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT1G20320	Predicted Synthetic Lethality	FSW = 0.1232	Unknown	NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN
AT1G54440	Predicted Synthetic Rescue	FSW = 0.0548	Unknown	3-5 EXONUCLEASE/ NUCLEIC ACID BINDING

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT2G38560 - ( TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA binding / RNA polymerase II transcription elongation factor/ transcription factor )

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