Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G10270 - ( CDKC1 (Cyclin-dependent kinase C1) kinase )
75 Proteins interacs with AT5G10270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G15000 | Experimental | FSW = 0.0289
| Unknown | LOCATED IN MITOCHONDRION EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PLASTID DEVELOPMENTAL PROTEIN DAG PUTATIVE (TAIRAT3G067902) HAS 50779 BLAST HITS TO 24732 PROTEINS IN 941 SPECIES ARCHAE - 10 BACTERIA - 4862 METAZOA - 25623 FUNGI - 7071 PLANTS - 6957 VIRUSES - 900 OTHER EUKARYOTES - 5356 (SOURCE NCBI BLINK) |
AT1G27630 | Experimentalpull down | FSW = 0.0410
| Unknown | CYCT13 (CYCLIN T 13) CYCLIN-DEPENDENT PROTEIN KINASE |
AT1G13450 | Experimental | FSW = 0.0410
| Unknown | DNA BINDING PROTEIN GT-1 |
AT5G55390 | Experimental | FSW = 0.0513
| Unknown | EDM2 TRANSCRIPTION FACTOR |
AT1G07920 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | HISTONE H4 |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G60770 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | 40S RIBOSOMAL PROTEIN S13 (RPS13A) |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT3G19980 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0337
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G16030 | PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0631
| Unknown | HISTONE H4 |
AT2G39800 | Predictedinteraction prediction | FSW = 0.0285
| Unknown | P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHETASE |
AT1G73820 | PredictedSynthetic Rescue | FSW = 0.0861
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT1G12520 | PredictedSynthetic Lethality | FSW = 0.1995
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT4G35800 | Predictedbiochemicalbiochemical | FSW = 0.1363
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G21660 | Predictedinteraction prediction | FSW = 0.0171
| Unknown | CCR2 (COLD CIRCADIAN RHYTHM AND RNA BINDING 2) RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING |
AT1G07940 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0188
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G18040 | PredictedPhenotypic SuppressionPhenotypic EnhancementDosage Growth Defect | FSW = 0.0484
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G79930 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0224
| Unknown | HSP91 ATP BINDING |
AT5G67270 | PredictedSynthetic Lethality | FSW = 0.1160
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G44530 | Predictedsynthetic growth defect | FSW = 0.1998
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G09860 | PredictedAffinity Capture-Western | FSW = 0.1135
| Unknown | NUCLEAR MATRIX PROTEIN-RELATED |
AT5G11170 | PredictedAffinity Capture-WesternPhenotypic Suppression | FSW = 0.0566
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT2G37470 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0346
| Unknown | HISTONE H2B PUTATIVE |
AT2G38560 | PredictedSynthetic Lethality | FSW = 0.2373
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT4G08350 | PredictedSynthetic Rescuesynthetic growth defect | FSW = 0.1253
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT3G19210 | PredictedSynthetic Lethality | FSW = 0.2116
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G34210 | Predictedsynthetic growth defectSynthetic Rescue | FSW = 0.1120
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G41840 | Predictedbiochemical | FSW = 0.0064
| Unknown | 40S RIBOSOMAL PROTEIN S2 (RPS2C) |
AT2G06210 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0704
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT2G44950 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethality | FSW = 0.1567
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.1352
| Unknown | ATEB1A MICROTUBULE BINDING |
AT2G31970 | PredictedSynthetic Lethality | FSW = 0.1665
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT1G10490 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0501
| Unknown | UNKNOWN PROTEIN |
AT5G54260 | PredictedSynthetic Lethality | FSW = 0.1794
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20850 | PredictedSynthetic Lethality | FSW = 0.1115
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G44910 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | PROTEIN BINDING |
AT1G08880 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0350
| Unknown | H2AXA DNA BINDING |
AT1G52740 | Predictedbiochemical | FSW = 0.2245
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G61040 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defect | FSW = 0.1603
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT2G02760 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethality | FSW = 0.2172
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G01090 | Predictedtwo hybridsynthetic growth defectPhenotypic EnhancementAffinity Capture-WesternCo-expression | FSW = 0.0942
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G21060 | Predictedsynthetic growth defect | FSW = 0.1197
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22590 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectsynthetic growth defectinteraction prediction | FSW = 0.1887
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT1G04020 | PredictedSynthetic Lethality | FSW = 0.1567
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.1541
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0831
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G66740 | PredictedSynthetic Lethality | FSW = 0.2011
| Unknown | SGA2 |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.1733
| Unknown | F-BOX FAMILY PROTEIN |
AT1G79730 | PredictedSynthetic Lethality | FSW = 0.1914
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1391
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.2034
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G25120 | Predictedsynthetic growth defect | FSW = 0.1229
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G10390 | PredictedColocalization | FSW = 0.1532
| Unknown | HISTONE H3 |
AT5G10400 | PredictedColocalization | FSW = 0.1256
| Unknown | HISTONE H3 |
AT5G10960 | PredictedSynthetic Lethality | FSW = 0.1389
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G11200 | PredictedAffinity Capture-WesternPhenotypic Suppression | FSW = 0.0309
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.1742
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G61150 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1462
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G63610 | Predictedsynthetic growth defect | FSW = 0.1231
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G63670 | Predictedsynthetic growth defect | FSW = 0.2690
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G67100 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0664
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT5G13680 | PredictedSynthetic Lethality | FSW = 0.2469
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G50320 | PredictedSynthetic Lethality | FSW = 0.1812
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT1G50370 | PredictedAffinity Capture-MS | FSW = 0.0442
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT5G40490 | PredictedAffinity Capture-MS | FSW = 0.1637
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT5G08565 | Predictedsynthetic growth defect | FSW = 0.1887
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G55255 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1277
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G14400 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1907
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.1394
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G73840 | PredictedSynthetic Rescue | FSW = 0.0228
| Unknown | ESP1 (ENHANCED SILENCING PHENOTYPE 1) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454