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AT3G22590 - ( RNA pol II accessory factor Cdc73 family protein )

149 Proteins interacs with AT3G22590

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G19640	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0178	Unknown	ARA7 GTP BINDING
AT2G44610	Predicted interaction prediction	FSW = 0.0419	Unknown	RAB6A GTP BINDING / PROTEIN BINDING
AT5G50850	Predicted Synthetic Lethality Synthetic Lethality Affinity Capture-MS interaction prediction	FSW = 0.0147	Unknown	MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT2G45200	Predicted Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.0234	Unknown	GOS12 (GOLGI SNARE 12) SNARE BINDING
AT5G45130	Predicted Synthetic Lethality Phenotypic Enhancement Synthetic Lethality	FSW = 0.1023	Unknown	RHA1 (RAB HOMOLOG 1) GTP BINDING
AT1G30470	Predicted Phenotypic Enhancement	FSW = 0.0281	Unknown	SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT3G13090	Predicted Affinity Capture-MS	FSW = 0.0058	Unknown	ATMRP8 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G65540	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0202	Unknown	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G15000	Predicted two hybrid	FSW = 0.0157	Unknown	LOCATED IN MITOCHONDRION EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PLASTID DEVELOPMENTAL PROTEIN DAG PUTATIVE (TAIRAT3G067902) HAS 50779 BLAST HITS TO 24732 PROTEINS IN 941 SPECIES ARCHAE - 10 BACTERIA - 4862 METAZOA - 25623 FUNGI - 7071 PLANTS - 6957 VIRUSES - 900 OTHER EUKARYOTES - 5356 (SOURCE NCBI BLINK)
AT2G28190	Predicted Phenotypic Enhancement	FSW = 0.1390	Unknown	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G60750	Predicted two hybrid	FSW = 0.0244	Unknown	TRANSKETOLASE PUTATIVE
AT4G31050	Predicted Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.0144	Unknown	LIPOYLTRANSFERASE (LIP2P)
AT3G59040	Predicted interaction prediction	FSW = 0.0048	Unknown	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G12520	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1678	Unknown	ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT5G63110	Predicted Phenotypic Enhancement	FSW = 0.1539	Unknown	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT4G35800	Predicted Reconstituted Complex Affinity Capture-Western Affinity Capture-Western synthetic growth defect interaction prediction	FSW = 0.2038	Unknown	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G56030	Predicted Affinity Capture-MS	FSW = 0.0076	Unknown	HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT5G06680	Predicted Affinity Capture-MS Co-expression	FSW = 0.0138	Unknown	SPC98 (SPINDLE POLE BODY COMPONENT 98) TUBULIN BINDING
AT5G23630	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1077	Unknown	ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.2177	Unknown	SEC22 TRANSPORTER
AT4G10450	Predicted synthetic growth defect	FSW = 0.0118	Unknown	60S RIBOSOMAL PROTEIN L9 (RPL90D)
AT5G52640	Predicted Affinity Capture-MS	FSW = 0.0654	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G50360	Predicted synthetic growth defect	FSW = 0.0168	Unknown	VIIIA MOTOR
AT5G19330	Predicted Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.0201	Unknown	ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT1G16970	Predicted Phenotypic Enhancement	FSW = 0.0329	Unknown	KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT2G44680	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1865	Unknown	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT3G10330	Predicted two hybrid Co-purification interaction prediction	FSW = 0.0673	Unknown	TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT4G16830	Predicted Affinity Capture-MS	FSW = 0.0298	Unknown	NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT4G26720	Predicted Phenotypic Enhancement	FSW = 0.0737	Unknown	PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G21700	Predicted Phenotypic Enhancement	FSW = 0.0461	Unknown	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT3G54610	Predicted Affinity Capture-MS	FSW = 0.1258	Unknown	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT2G38810	Predicted interaction prediction Co-expression	FSW = 0.0367	Unknown	HTA8 (HISTONE H2A 8) DNA BINDING
AT3G12810	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.3045	Unknown	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G13445	Predicted two hybrid co-fractionation Co-fractionation	FSW = 0.0544	Unknown	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G44530	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1898	Unknown	HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G35910	Predicted Synthetic Lethality Synthetic Lethality interaction prediction Co-expression	FSW = 0.1397	Unknown	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT2G43810	Predicted Synthetic Lethality Synthetic Lethality interaction prediction Co-expression	FSW = 0.1956	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT3G17590	Predicted Phenotypic Enhancement	FSW = 0.0685	Unknown	BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT1G19120	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1311	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G10710	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1568	Unknown	SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1568	Unknown	GTC2
AT5G09860	Predicted Affinity Capture-Western synthetic growth defect Co-expression	FSW = 0.1259	Unknown	NUCLEAR MATRIX PROTEIN-RELATED
AT3G06720	Predicted Affinity Capture-MS	FSW = 0.0384	Unknown	IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT4G31720	Predicted Affinity Capture-MS	FSW = 0.0395	Unknown	TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT2G41630	Predicted Co-purification two hybrid	FSW = 0.0482	Unknown	TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT5G11170	Predicted interologs mapping	FSW = 0.0298	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G07370	Predicted Phenotypic Suppression	FSW = 0.1561	Unknown	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G13370	Predicted Phenotypic Suppression	FSW = 0.1599	Unknown	CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G36740	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2831	Unknown	SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.3022	Unknown	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT3G20010	Predicted Phenotypic Suppression	FSW = 0.0320	Unknown	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT4G08350	Predicted Affinity Capture-MS interaction prediction	FSW = 0.1221	Unknown	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G34210	Predicted Affinity Capture-MS	FSW = 0.1122	Unknown	STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT1G55520	Predicted co-fractionation Co-fractionation two hybrid	FSW = 0.0607	Unknown	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT2G06210	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2357	Unknown	ELF8 (EARLY FLOWERING 8) BINDING
AT2G44950	Predicted Phenotypic Suppression	FSW = 0.2890	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT2G46320	Predicted Synthetic Lethality	FSW = 0.0132	Unknown	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT1G59900	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1017	Unknown	AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT2G22290	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0413	Unknown	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G75510	Predicted Co-purification Affinity Capture-Western	FSW = 0.2662	Unknown	TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT1G04640	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0175	Unknown	LIP2 (LIPOYLTRANSFERASE 2) LIPOYLTRANSFERASE
AT1G24180	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0160	Unknown	IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT3G54840	Predicted interaction prediction	FSW = 0.0140	Unknown	ARA6 GTP BINDING / GTPASE
AT5G41480	Predicted Affinity Capture-MS	FSW = 0.0059	Unknown	GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G28730	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1042	Unknown	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT5G19910	Predicted Phenotypic Enhancement	FSW = 0.2639	Unknown	SOH1 FAMILY PROTEIN
AT4G21710	Predicted Co-purification interaction prediction	FSW = 0.1011	Unknown	NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G54260	Predicted Phenotypic Enhancement	FSW = 0.1952	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G36200	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.0590	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT1G05910	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.0994	Unknown	CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G09600	Predicted Affinity Capture-MS	FSW = 0.0175	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT1G15780	Predicted Affinity Capture-Western Affinity Capture-Western two hybrid	FSW = 0.1374	Unknown	UNKNOWN PROTEIN
AT1G51310	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.1210	Unknown	TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
AT1G51710	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1834	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect Synthetic Lethality Phenotypic Enhancement	FSW = 0.3030	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G59890	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2560	Unknown	SNL5 (SIN3-LIKE 5)
AT1G61040	Predicted Synthetic Lethality Synthetic Lethality Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3834	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G66740	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1954	Unknown	SGA2
AT1G67190	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1468	Unknown	F-BOX FAMILY PROTEIN
AT1G79730	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.3599	Unknown	ELF7 (EARLY FLOWERING 7)
AT2G23070	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1220	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G44150	Predicted interaction prediction Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement Synthetic Rescue Co-expression	FSW = 0.2301	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G18860	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement synthetic growth defect interaction prediction	FSW = 0.1818	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G21060	Predicted synthetic growth defect Co-expression	FSW = 0.2065	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G04020	Predicted synthetic growth defect	FSW = 0.1298	Unknown	BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G10930	Predicted Phenotypic Enhancement	FSW = 0.0800	Unknown	RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G54390	Predicted Synthetic Lethality	FSW = 0.1228	Unknown	PHD FINGER PROTEIN-RELATED
AT1G80410	Predicted synthetic growth defect	FSW = 0.1227	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G30410	Predicted Phenotypic Enhancement	FSW = 0.0416	Unknown	KIS (KIESEL) UNFOLDED PROTEIN BINDING
AT3G06670	Predicted Phenotypic Enhancement	FSW = 0.0568	Unknown	BINDING
AT3G24030	Predicted Phenotypic Suppression	FSW = 0.0886	Unknown	HYDROXYETHYLTHIAZOLE KINASE FAMILY PROTEIN
AT3G42660	Predicted Phenotypic Enhancement	FSW = 0.2258	Unknown	NUCLEOTIDE BINDING
AT3G49660	Predicted two hybrid synthetic growth defect	FSW = 0.2000	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G05700	Predicted Affinity Capture-MS	FSW = 0.0145	Unknown	ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1) ARGINYLTRANSFERASE
AT5G09230	Predicted Phenotypic Suppression	FSW = 0.0581	Unknown	SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT5G10270	Predicted Synthetic Lethality Synthetic Lethality synthetic growth defect synthetic growth defect interaction prediction	FSW = 0.1887	Unknown	CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10790	Predicted Phenotypic Suppression	FSW = 0.1203	Unknown	UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G13680	Predicted Synthetic Lethality Synthetic Lethality interaction prediction Co-expression	FSW = 0.2049	Unknown	ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G13780	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1945	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G20000	Predicted Affinity Capture-MS	FSW = 0.0026	Unknown	26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE
AT5G23290	Predicted Phenotypic Suppression	FSW = 0.1287	Unknown	PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G26680	Predicted synthetic growth defect	FSW = 0.1387	Unknown	ENDONUCLEASE PUTATIVE
AT5G45600	Predicted Phenotypic Enhancement Synthetic Lethality	FSW = 0.3399	Unknown	GAS41 PROTEIN BINDING
AT5G46030	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1424	Unknown	UNKNOWN PROTEIN
AT5G50320	Predicted Synthetic Lethality	FSW = 0.1762	Unknown	ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G58410	Predicted Phenotypic Enhancement	FSW = 0.1042	Unknown	BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G61150	Predicted Synthetic Lethality Synthetic Lethality Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement interaction prediction	FSW = 0.2894	Unknown	VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G63610	Predicted two hybrid Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.1754	Unknown	CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G47120	Predicted Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.0470	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G54380	Predicted Phenotypic Enhancement	FSW = 0.1874	Unknown	SAC3/GANP FAMILY PROTEIN
AT3G58560	Predicted Synthetic Lethality Synthetic Lethality Affinity Capture-Western	FSW = 0.2205	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G04210	Predicted Phenotypic Suppression	FSW = 0.0857	Unknown	PUX4 PROTEIN BINDING
AT4G17890	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0474	Unknown	AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT4G22140	Predicted Phenotypic Enhancement	FSW = 0.1443	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G30870	Predicted Phenotypic Enhancement	FSW = 0.0514	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G33100	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0703	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT4G33240	Predicted Phenotypic Enhancement	FSW = 0.1481	Unknown	1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT4G35620	Predicted Phenotypic Suppression	FSW = 0.0044	Unknown	CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G10260	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2324	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G11200	Predicted interologs mapping	FSW = 0.0297	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT5G13070	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0068	Unknown	MSF1-LIKE FAMILY PROTEIN
AT5G16640	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0160	Unknown	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT5G42000	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.1816	Unknown	ORMDL FAMILY PROTEIN
AT5G48120	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1186	Unknown	BINDING
AT5G48640	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1721	Unknown	CYCLIN FAMILY PROTEIN
AT5G58003	Predicted synthetic growth defect	FSW = 0.1210	Unknown	CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G63670	Predicted Phenotypic Enhancement	FSW = 0.2597	Unknown	SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G65180	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1655	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT5G66100	Predicted Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.1520	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT5G67320	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1315	Unknown	HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT2G23080	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0672	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G02690	Predicted Affinity Capture-MS	FSW = 0.0235	Unknown	IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER
AT3G11240	Predicted Affinity Capture-MS	FSW = 0.0072	Unknown	ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE
AT1G20320	Predicted synthetic growth defect	FSW = 0.1185	Unknown	NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN
AT4G35890	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0181	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT3G26990	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0281	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK)
AT1G64750	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0266	Unknown	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT5G13060	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0076	Unknown	ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING
AT2G35210	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0416	Unknown	RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT1G03560	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0244	Unknown	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT5G48630	Predicted Synthetic Lethality Synthetic Lethality interaction prediction	FSW = 0.0377	Unknown	CYCLIN FAMILY PROTEIN
AT1G10450	Predicted Synthetic Lethality	FSW = 0.1049	Unknown	SNL6 (SIN3-LIKE 6)
AT1G54440	Predicted Synthetic Lethality Synthetic Lethality Co-expression	FSW = 0.0312	Unknown	3-5 EXONUCLEASE/ NUCLEIC ACID BINDING
AT2G18000	Predicted Synthetic Lethality	FSW = 0.1701	Unknown	TAF14 (TBP-ASSOCIATED FACTOR 14)
AT5G15770	Predicted interaction prediction	FSW = 0.0304	Unknown	ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE
AT5G45010	Predicted interaction prediction	FSW = 0.0042	Unknown	ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V)
AT5G46750	Predicted interaction prediction	FSW = 0.0173	Unknown	AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT1G01230	Predicted interaction prediction	FSW = 0.0196	Unknown	ORMDL FAMILY PROTEIN
AT1G24190	Predicted interaction prediction	FSW = 0.0154	Unknown	SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G22590 - ( RNA pol II accessory factor Cdc73 family protein )

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