Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G36200 - ( kinesin motor protein-related )
66 Proteins interacs with AT2G36200Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20010 | PredictedSynthetic RescueEnriched domain pairCo-expression | FSW = 0.1190
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G51260 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G61000 | Predictedtwo hybridinteraction prediction | FSW = 0.0779
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
AT1G54270 | Predictedsynthetic growth defect | FSW = 0.0025
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.0559
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850 | PredictedAffinity Capture-MS | FSW = 0.0481
| Unknown | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G60840 | Predictedinteraction prediction | FSW = 0.3084
| Unknown | MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4) |
AT3G22110 | PredictedAffinity Capture-MS | FSW = 0.0751
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G38495 | Predictedsynthetic growth defect | FSW = 0.0271
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK) |
AT1G12520 | Predictedsynthetic growth defect | FSW = 0.1064
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT1G71440 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.2552
| Unknown | PFI (PFIFFERLING) |
AT1G35160 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0911
| Unknown | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G11890 | PredictedSynthetic Lethality | FSW = 0.0579
| Unknown | SEC22 TRANSPORTER |
AT3G45850 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0601
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G10430 | Predictedsynthetic growth defect | FSW = 0.0502
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G04820 | Predictedsynthetic growth defect | FSW = 0.0214
| Unknown | PSEUDOURIDINE SYNTHASE |
AT2G25880 | PredictedSynthetic Lethality | FSW = 0.0311
| Unknown | ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE |
AT2G45490 | Predictedinteraction prediction | FSW = 0.0748
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT4G05190 | PredictedSynthetic RescueSynthetic RescueSynthetic LethalitySynthetic Rescue | FSW = 0.4401
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G67270 | Predictedinteraction prediction | FSW = 0.2485
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G12810 | Predictedsynthetic growth defect | FSW = 0.1432
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G19120 | PredictedSynthetic Lethality | FSW = 0.0752
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | PredictedSynthetic Lethality | FSW = 0.1404
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G10130 | PredictedSynthetic Lethality | FSW = 0.0273
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G14690 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2689
| Unknown | MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) |
AT3G47690 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.3256
| Unknown | ATEB1A MICROTUBULE BINDING |
AT3G25980 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1919
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G40820 | PredictedPhenotypic Enhancement | FSW = 0.0217
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT4G27180 | PredictedSynthetic Rescue | FSW = 0.2944
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT3G10530 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0037
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G28620 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic EnhancementSynthetic Lethalityinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1268
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G42660 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethalitysynthetic growth defect | FSW = 0.2876
| Unknown | NUCLEOTIDE BINDING |
AT1G52740 | Predictedsynthetic growth defect | FSW = 0.1399
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G17370 | Predictedsynthetic growth defect | FSW = 0.0322
| Unknown | UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING |
AT3G43980 | Predictedsynthetic growth defect | FSW = 0.0214
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29A) |
AT2G44150 | Predictedsynthetic growth defect | FSW = 0.0964
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT4G19003 | Predictedsynthetic growth defect | FSW = 0.0759
| Unknown | VPS25 |
AT5G35980 | Predictedsynthetic growth defect | FSW = 0.0215
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.1157
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G49510 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethality | FSW = 0.2477
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G23290 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethality | FSW = 0.2608
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G16270 | PredictedSynthetic Lethality | FSW = 0.2251
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT4G15930 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethality | FSW = 0.0748
| Unknown | MICROTUBULE MOTOR |
AT3G22590 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0590
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G22480 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethality | FSW = 0.2324
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT2G44580 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.3099
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G33560 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.1559
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT1G29990 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethality | FSW = 0.2305
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT3G02820 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.2221
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G04730 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.2434
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08780 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethality | FSW = 0.2624
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G13460 | PredictedSynthetic Lethality | FSW = 0.0883
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT2G30410 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1825
| Unknown | KIS (KIESEL) UNFOLDED PROTEIN BINDING |
AT1G79890 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethality | FSW = 0.2798
| Unknown | HELICASE-RELATED |
AT4G08960 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1724
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT5G13780 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1618
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G80410 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1101
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT5G40490 | PredictedSynthetic Lethality | FSW = 0.0569
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.1045
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT4G04210 | PredictedSynthetic Lethality | FSW = 0.1125
| Unknown | PUX4 PROTEIN BINDING |
AT3G11450 | PredictedSynthetic Lethality | FSW = 0.0132
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT1G77720 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0470
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G39840 | Predictedinteraction prediction | FSW = 0.0090
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G26020 | Predictedinteraction prediction | FSW = 0.1898
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT5G54670 | Predictedinteraction prediction | FSW = 0.3284
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT2G37420 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0292
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454