Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G19003 - ( VPS25 )
36 Proteins interacs with AT4G19003Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G11630 | Predictedsynthetic growth defect | FSW = 0.0534
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G53850 | Predictedtwo hybrid | FSW = 0.0229
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT5G09260 | Predictedtwo hybridReconstituted Complextwo hybrid | FSW = 0.3673
| Unknown | VPS202 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 202) |
AT5G19450 | Predictedinterologs mapping | FSW = 0.0220
| Unknown | CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G63880 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridReconstituted Complexinteraction prediction | FSW = 0.3271
| Unknown | VPS201 |
AT2G07687 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0750
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 3 |
AT2G07727 | PredictedAffinity Capture-Western | FSW = 0.0147
| Unknown | CYTOCHROME B (MTCYB) (COB) (CYTB) |
AT2G07741 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0373
| Unknown | ATPASE SUBUNIT 6 PUTATIVE |
AT2G07695 | PredictedAffinity Capture-WesternAffinity Capture-WesternSynthetic Rescue | FSW = 0.0750
| Unknown | CYTOCHROME C OXIDASE SUBUNIT II PUTATIVE |
AT3G14980 | PredictedReconstituted Complex | FSW = 0.0450
| Unknown | PHD FINGER TRANSCRIPTION FACTOR PUTATIVE |
AT2G07671 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0293
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
ATMG01360 | PredictedAffinity Capture-Western | FSW = 0.0822
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 1 |
AT2G36200 | Predictedsynthetic growth defect | FSW = 0.0759
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT4G04460 | Predictedtwo hybridtwo hybrid | FSW = 0.0256
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT5G04920 | Predictedtwo hybridtwo hybridtwo hybridCo-crystal Structuretwo hybridCo-crystal Structureinteraction predictionEnriched domain pair | FSW = 0.4270
| Unknown | VACUOLAR PROTEIN SORTING 36 FAMILY PROTEIN / VPS36 FAMILY PROTEIN |
AT4G27040 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridCo-crystal StructureCo-crystal StructureAffinity Capture-MStwo hybridtwo hybridEnriched domain pair | FSW = 0.4111
| Unknown | VPS22 |
AT5G26600 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING |
AT3G22860 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0089
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.1691
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G10210 | PredictedPhenotypic Enhancement | FSW = 0.0064
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.0629
| Unknown | SGA2 |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.1618
| Unknown | F-BOX FAMILY PROTEIN |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0777
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.0721
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1708
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.1372
| Unknown | NUCLEOTIDE BINDING |
AT4G21560 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.1035
| Unknown | VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1) TRANSPORTER |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.0708
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1006
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G17440 | Predictedinterologs mapping | FSW = 0.0822
| Unknown | LUC7 N_TERMINUS DOMAIN-CONTAINING PROTEIN |
AT5G53770 | PredictedSynthetic Lethality | FSW = 0.0860
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G66640 | Predictedbiochemical | FSW = 0.0044
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G67290 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0822
| Unknown | FAD-DEPENDENT OXIDOREDUCTASE FAMILY PROTEIN |
AT5G10960 | PredictedAffinity Capture-Western | FSW = 0.1050
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.0778
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT4G05000 | Predictedtwo hybrid | FSW = 0.2576
| Unknown | VPS28-2 TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454