Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G09260 - ( VPS202 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 202) )
19 Proteins interacs with AT5G09260Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63880 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.5357
| Class C:plasma membrane | VPS201 |
AT2G19830 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.2130
| Class C:plasma membrane | SNF72 |
AT4G27040 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.6052
| Unknown | VPS22 |
AT4G05000 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.3333
| Unknown | VPS28-2 TRANSPORTER |
AT3G45000 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.3077
| Unknown | VPS242 |
AT2G27600 | PredictedReconstituted Complextwo hybrid | FSW = 0.1130
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G19003 | Predictedtwo hybridReconstituted Complextwo hybrid | FSW = 0.3673
| Unknown | VPS25 |
AT5G53770 | Predictedsynthetic growth defect | FSW = 0.0756
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1214
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.0527
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT4G25120 | Predictedsynthetic growth defect | FSW = 0.0677
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.1692
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1721
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.1693
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.1177
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0847
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.2217
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G04730 | PredictedSynthetic Lethality | FSW = 0.1597
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT5G04920 | Predictedtwo hybridtwo hybrid | FSW = 0.7485
| Unknown | VACUOLAR PROTEIN SORTING 36 FAMILY PROTEIN / VPS36 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454