Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G10530 - ( transducin family protein / WD-40 repeat family protein )
60 Proteins interacs with AT3G10530| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G01950
   | Experimentalphage display | FSW = 0.0083
| Unknown | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
| AT3G09630
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0493
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT3G09200
| PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
| AT3G16640
| PredictedAffinity Capture-MS | FSW = 0.0758
| Unknown | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) |
| AT4G01370
| Predictedbiochemical | FSW = 0.0025
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
| AT3G52140 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0128
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
| AT5G22330
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0084
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
| AT3G06530
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4352
| Unknown | BINDING |
| AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2302
| Unknown | RNA BINDING |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.2529
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G60790
| PredictedAffinity Capture-MS | FSW = 0.0586
| Unknown | ATGCN1 TRANSPORTER |
| AT5G20890
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0344
| Unknown | CHAPERONIN PUTATIVE |
| AT5G57015
| PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G03930
| PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
| AT1G63810
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4400
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
| AT4G25630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2285
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT3G56990
| PredictedAffinity Capture-MS | FSW = 0.3646
| Unknown | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
| AT3G44530
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0035
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT3G21540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4347
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G19610 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0703
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G05060
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3214
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT3G12860
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4078
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT1G56110
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0921
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
| AT2G37470
| PredictedAffinity Capture-MS | FSW = 0.0037
| Unknown | HISTONE H2B PUTATIVE |
| AT4G05410
| PredictedAffinity Capture-MS | FSW = 0.5646
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G66540
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4636
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
| AT3G57000
| PredictedAffinity Capture-MS | FSW = 0.5339
| Unknown | NUCLEOLAR ESSENTIAL PROTEIN-RELATED |
| AT1G70190
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0340
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT4G30990
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0749
| Unknown | BINDING |
| AT3G02530
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0337
| Unknown | CHAPERONIN PUTATIVE |
| AT2G47990
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3665
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
| AT1G10490
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3337
| Unknown | UNKNOWN PROTEIN |
| AT2G36200
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0037
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT1G06720
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4918
| Unknown | INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK) |
| AT1G15440
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2244
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G69070
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4588
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
| AT2G17250
| PredictedAffinity Capture-MS | FSW = 0.5575
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
| AT2G34357 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3160
| Unknown | BINDING |
| AT2G47420
| PredictedAffinity Capture-MS | FSW = 0.3348
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
| AT3G07890
| PredictedAffinity Capture-MS | FSW = 0.0891
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
| AT1G31660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4083
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT1G72320
| PredictedAffinity Capture-MS | FSW = 0.3775
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
| AT4G07410
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5259
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G28200
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5794
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
| AT4G30991 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4710
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
| AT5G08420
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4111
| Unknown | RNA BINDING |
| AT3G15460
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0586
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G60240
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0138
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
| AT4G04940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5095
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G28450
| PredictedAffinity Capture-MS | FSW = 0.6117
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G36420
| PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT5G15750
| PredictedAffinity Capture-MS | FSW = 0.4802
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
| AT5G16750
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2692
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
| AT5G26360
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0322
| Unknown | CHAPERONIN PUTATIVE |
| AT5G65900
| PredictedAffinity Capture-Western | FSW = 0.1209
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G52930
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0303
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G05540
| PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
| AT2G40010
| PredictedAffinity Capture-MS | FSW = 0.0341
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
| AT1G27470
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2751
| Unknown | TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED |
| AT1G20370
| Predictedinteraction predictiontwo hybridCo-expression | FSW = 0.0325
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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