Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G01950 - ( BRL2 (BRI1-LIKE 2) ATP binding / protein serine/threonine kinase/ transmembrane receptor protein serine/threonine kinase )

64 Proteins interacs with AT2G01950
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G02500

Experimental

phage display

FSW = 0.0051

Class D:

cytosol (p = 0.67)

 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT3G16640

Experimental

phage display

FSW = 0.0488

Class D:

cytosol (p = 0.67)

 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)
AT1G78300

Experimental

FSW = 0.0096

Class D:

cytosol (p = 0.67)

 GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G34720

Experimental

phage display

FSW = 0.0299

Class D:

unclear (p = 0.09)

 AVA-P1 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G62290

Experimental

phage display

FSW = 0.0056

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT4G17170

Experimental

phage display

FSW = 0.0054

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE
AT4G30190

Experimental

phage display

FSW = 0.0265

Class D:

cytosol (p = 0.67)

 AHA2 ATPASE/ HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM
AT4G31490

Experimental

phage display

FSW = 0.0119

Class D:

cytosol (p = 0.67)

 COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT2G28100

Experimental

phage display

FSW = 0.0141

Class D:

unclear (p = 0.09)

plastid (p = 0.78)

cytosol (p = 0.67)

 ATFUC1 (ALPHA-L-FUCOSIDASE 1) ALPHA-L-FUCOSIDASE
AT3G14220

Experimental

phage display

FSW = 0.0142

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

 GDSL-MOTIF LIPASE/HYDROLASE FAMILY PROTEIN
AT1G54010

Experimental

phage display

FSW = 0.0141

Class D:

plastid (p = 0.78)

 MYROSINASE-ASSOCIATED PROTEIN PUTATIVE
AT1G14000

Experimental

phage display

FSW = 0.0398

Class D:

cytosol (p = 0.67)

 VIK (VH1-INTERACTING KINASE) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G42980

Experimental

phage display

FSW = 0.0100

Class D:

cytosol (p = 0.67)

 ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT2G13360

Experimental

phage display

FSW = 0.0142

Class D:

unclear (p = 0.09)

mitochondrion (p = 0.82)

 AGT (ALANINEGLYOXYLATE AMINOTRANSFERASE) ALANINE-GLYOXYLATE TRANSAMINASE/ SERINE-GLYOXYLATE TRANSAMINASE/ SERINE-PYRUVATE TRANSAMINASE
AT4G35090

Experimental

phage display

FSW = 0.0151

Class D:

unclear (p = 0.09)

plastid (p = 0.78)

mitochondrion (p = 0.82)

 CAT2 (CATALASE 2) CATALASE
AT2G19940

Experimental

phage display

FSW = 0.0478

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE/ NAD OR NADH BINDING / BINDING / CATALYTIC/ OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS NAD OR NADP AS ACCEPTOR / PROTEIN DIMERIZATION
AT5G38410

Experimental

phage display

FSW = 0.0148

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 3B / RUBISCO SMALL SUBUNIT 3B (RBCS-3B) (ATS3B)
AT5G01530

Experimental

phage display

FSW = 0.0597

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 CHLOROPHYLL A-B BINDING PROTEIN CP29 (LHCB4)
AT5G63570

Experimental

phage display

FSW = 0.0478

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 GSA1 (GLUTAMATE-1-SEMIALDEHYDE-21-AMINOMUTASE) GLUTAMATE-1-SEMIALDEHYDE 21-AMINOMUTASE
AT1G35670

Experimental

phage display

FSW = 0.0052

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE
AT5G54160

Experimental

phage display

FSW = 0.0299

Class D:

cytosol (p = 0.67)

 ATOMT1 (O-METHYLTRANSFERASE 1) CAFFEATE O-METHYLTRANSFERASE/ MYRICETIN 3-O-METHYLTRANSFERASE/ QUERCETIN 3-O-METHYLTRANSFERASE
AT1G20450

Experimental

phage display

FSW = 0.0144

Unknown

 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10) ACTIN BINDING
AT1G68220

Experimental

phage display

FSW = 0.0597

Class D:

unclear (p = 0.09)

 UNKNOWN PROTEIN
AT5G65440

Experimental

phage display

FSW = 0.0597

Class D:

mitochondrion (p = 0.82)

 UNKNOWN PROTEIN
AT3G56460

Experimental

phage display

FSW = 0.0478

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

 OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT3G21720

Experimental

phage display

FSW = 0.0157

Class D:

mitochondrion (p = 0.82)

 ICL (ISOCITRATE LYASE) CATALYTIC/ ISOCITRATE LYASE
AT5G15230

Experimental

phage display

FSW = 0.0142

Unknown

 GASA4 (GAST1 PROTEIN HOMOLOG 4)
AT3G13750

Experimental

phage display

FSW = 0.0296

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 BGAL1 (BETA GALACTOSIDASE 1) BETA-GALACTOSIDASE/ CATALYTIC/ CATION BINDING / HEME BINDING / PEROXIDASE/ SUGAR BINDING
AT4G12880

Experimental

phage display

FSW = 0.0141

Class D:

mitochondrion (p = 0.82)

 PLASTOCYANIN-LIKE DOMAIN-CONTAINING PROTEIN
AT1G13750

Experimental

phage display

FSW = 0.0142

Unknown

 CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN
AT4G21960

Experimental

phage display

FSW = 0.0398

Class D:

unclear (p = 0.09)

plastid (p = 0.78)

 PRXR1 ELECTRON CARRIER/ HEME BINDING / PEROXIDASE
AT1G05260

Experimental

phage display

FSW = 0.0146

Class D:

unclear (p = 0.09)

 RCI3 (RARE COLD INDUCIBLE GENE 3) PEROXIDASE
AT3G23050

Experimental

phage display

FSW = 0.0171

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

 IAA7 (INDOLE-3-ACETIC ACID 7) TRANSCRIPTION FACTOR
AT2G28840

Experimental

phage display

FSW = 0.0068

Unknown

 ANKYRIN REPEAT FAMILY PROTEIN
AT2G42580

Experimental

phage display

FSW = 0.0451

Unknown

 TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) BINDING / PROTEIN BINDING
AT2G47930

Experimental

phage display

FSW = 0.0141

Unknown

 AGP26 (ARABINOGALACTAN PROTEIN 26)
AT3G16370

Experimental

phage display

FSW = 0.0142

Unknown

 GDSL-MOTIF LIPASE/HYDROLASE FAMILY PROTEIN
AT4G30150

Experimental

phage display

FSW = 0.0597

Unknown

 EXPRESSED IN 13 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR 27S PRE-RRNA PROCESSING URB2/NPA2 (INTERPROIPR018849) HAS 31 BLAST HITS TO 27 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 3 FUNGI - 0 PLANTS - 19 VIRUSES - 3 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK)
AT5G14240

Experimental

phage display

FSW = 0.0159

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) PHOSDUCIN (INTERPROIPR001200) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) HAS 750 BLAST HITS TO 750 PROTEINS IN 282 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 486 FUNGI - 126 PLANTS - 51 VIRUSES - 0 OTHER EUKARYOTES - 85 (SOURCE NCBI BLINK)
AT5G17190

Experimental

phage display

FSW = 0.0141

Unknown

 UNKNOWN PROTEIN
AT5G43190

Experimental

phage display

FSW = 0.0141

Unknown

 F-BOX FAMILY PROTEIN (FBX6)
AT1G19530

Experimental

phage display

FSW = 0.0141

Unknown

 UNKNOWN PROTEIN
AT3G43850

Experimental

phage display

FSW = 0.0597

Unknown

 UNKNOWN PROTEIN
AT4G05320

Experimental

phage display

FSW = 0.0028

Unknown

 UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT1G01120

Experimental

phage display

FSW = 0.0478

Unknown

 KCS1 (3-KETOACYL-COA SYNTHASE 1) ACYLTRANSFERASE/ FATTY ACID ELONGASE
AT1G04170

Experimental

phage display

FSW = 0.0043

Unknown

 EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G12440

Experimental

phage display

FSW = 0.0296

Unknown

 ZINC FINGER (AN1-LIKE) FAMILY PROTEIN
AT1G61740

Experimental

phage display

FSW = 0.0141

Unknown

 UNKNOWN PROTEIN
AT3G55520

Experimental

phage display

FSW = 0.0597

Unknown

 IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE
AT3G59920

Experimental

phage display

FSW = 0.0142

Unknown

 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) RAB GDP-DISSOCIATION INHIBITOR
AT5G14920

Experimental

phage display

FSW = 0.0597

Unknown

 GIBBERELLIN-REGULATED FAMILY PROTEIN
AT5G46250

Experimental

phage display

FSW = 0.0184

Unknown

 RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G63190

Experimental

phage display

FSW = 0.0407

Unknown

 MA3 DOMAIN-CONTAINING PROTEIN
AT1G11650

Experimental

phage display

FSW = 0.0057

Unknown

 RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE
AT2G31570

Experimental

phage display

FSW = 0.0299

Unknown

 ATGPX2 (GLUTATHIONE PEROXIDASE 2) GLUTATHIONE PEROXIDASE
AT2G37130

Experimental

phage display

FSW = 0.0141

Unknown

 PEROXIDASE 21 (PER21) (P21) (PRXR5)
AT3G04720

Experimental

phage display

FSW = 0.0597

Unknown

 PR4 (PATHOGENESIS-RELATED 4) CHITIN BINDING
AT3G10530

Experimental

phage display

FSW = 0.0083

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G26940

Experimental

phage display

FSW = 0.0341

Unknown

 GALACTOSYLTRANSFERASE FAMILY PROTEIN
AT4G33210

Experimental

phage display

FSW = 0.0141

Unknown

 F-BOX FAMILY PROTEIN (FBL15)
AT4G36360

Experimental

phage display

FSW = 0.0300

Unknown

 BGAL3 (BETA-GALACTOSIDASE 3) BETA-GALACTOSIDASE/ CATALYTIC/ CATION BINDING / SUGAR BINDING
AT5G11500

Experimental

phage display

FSW = 0.0072

Unknown

 UNKNOWN PROTEIN
AT4G39400

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0546

Unknown

 BRI1 (BRASSINOSTEROID INSENSITIVE 1) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G55610

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0312

Unknown

 BRL1 (BRI 1 LIKE) KINASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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