Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G14240 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 23 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s Thioredoxin fold (InterProIPR012335) Phosducin (InterProIPR001200) Thioredoxin-like fold (InterProIPR012336) Has 750 Blast hits to 750 proteins in 282 species Archae - 0 Bacteria - 2 Metazoa - 486 Fungi - 126 Plants - 51 Viruses - 0 Other Eukaryotes - 85 (source NCBI BLink) )
12 Proteins interacs with AT5G14240| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G01950
   | Experimentalphage display | FSW = 0.0159
| Unknown | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
| AT5G10450
| Predictedin vitro | FSW = 0.0096
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT4G34460
| PredictedReconstituted Complexinteraction predictionEnriched domain pairCo-expression | FSW = 0.0712
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G11680
| PredictedSynthetic Lethality | FSW = 0.0132
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
| AT3G18190
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1943
| Unknown | CHAPERONIN PUTATIVE |
| AT2G25070
| Predictedinterologs mapping | FSW = 0.0368
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
| AT5G20890
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2130
| Unknown | CHAPERONIN PUTATIVE |
| AT3G02530
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2085
| Unknown | CHAPERONIN PUTATIVE |
| AT3G03960
| PredictedAffinity Capture-MS | FSW = 0.2722
| Unknown | CHAPERONIN PUTATIVE |
| AT3G11830
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2368
| Unknown | CHAPERONIN PUTATIVE |
| AT3G27000
| PredictedSynthetic Lethality | FSW = 0.0339
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT4G25120 | Predictedtwo hybrid | FSW = 0.0083
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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