Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G55610 - ( BRL1 (BRI 1 LIKE) kinase )

6 Proteins interacs with AT1G55610
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G33430

Experimental

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confocal microscopy

FSW = 0.0750

Class A:

plasma membrane

Class B:

extracellular

Class D:

plasma membrane (p = 0.25)

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN SERINE/THREONINE KINASE
AT5G42750

Experimental

pull down

FSW = 0.1170

Class A:

plasma membrane

Class B:

cytosol

 BKI1 (BRI1 KINASE INHIBITOR 1) PROTEIN HETERODIMERIZATION
AT1G20140

Experimental

FSW = 0.0157

Class B:

plasma membrane

nucleus

Class D:

cytosol (p = 0.67)

 ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G39400

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2395

Class C:

plasma membrane

 BRI1 (BRASSINOSTEROID INSENSITIVE 1) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G01950

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0312

Unknown

 BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT1G20920

Predicted

Gene fusion method

FSW = 0.0207

Unknown

 DEAD BOX RNA HELICASE PUTATIVE

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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