Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G20920 - ( DEAD box RNA helicase putative )
83 Proteins interacs with AT1G20920| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G63400
   | Predictedbiochemical | FSW = 0.0219
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
| AT2G20450
| PredictedAffinity Capture-MS | FSW = 0.3054
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT3G08710
| PredictedAffinity Capture-MS | FSW = 0.2263
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT3G56190
| PredictedAffinity Capture-MS | FSW = 0.2029
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT1G54270
| PredictedAffinity Capture-MS | FSW = 0.0858
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT1G22840
| PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
| AT3G26590
| Predictedbiochemical | FSW = 0.0210
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT3G20390
| PredictedAffinity Capture-MS | FSW = 0.2948
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
| AT3G08950
| PredictedAffinity Capture-MS | FSW = 0.3926
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
| AT3G19980
| PredictedAffinity Capture-MS | FSW = 0.3056
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.4240
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT5G13050
| PredictedAffinity Capture-MS | FSW = 0.3881
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.2907
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT1G31190
| PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.2379
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.4304
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
| AT3G47370
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1180
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
| AT5G62880
| PredictedAffinity Capture-MS | FSW = 0.0883
| Unknown | ARAC10 GTP BINDING |
| AT1G27970
| PredictedAffinity Capture-MS | FSW = 0.3221
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT4G28950
| PredictedAffinity Capture-MS | FSW = 0.2795
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
| AT3G13560
| PredictedAffinity Capture-MS | FSW = 0.1413
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT5G08570
| PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | PYRUVATE KINASE PUTATIVE |
| AT1G20200
| PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
| AT5G62300
| PredictedAffinity Capture-MS | FSW = 0.3054
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
| AT4G24400
| PredictedAffinity Capture-MS | FSW = 0.4783
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT1G55610
| PredictedGene fusion method | FSW = 0.0207
| Unknown | BRL1 (BRI 1 LIKE) KINASE |
| AT2G20580
| PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
| AT1G20760
| PredictedAffinity Capture-MS | FSW = 0.2414
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT4G36860
| PredictedAffinity Capture-MS | FSW = 0.3042
| Unknown | ZINC ION BINDING |
| AT4G00520
| PredictedAffinity Capture-MS | FSW = 0.1176
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
| AT5G54840
| PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | SGP1 GTP BINDING |
| AT5G44500
| PredictedAffinity Capture-MS | FSW = 0.3446
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
| AT4G31720
| PredictedAffinity Capture-MS | FSW = 0.0495
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
| AT2G37470
| PredictedAffinity Capture-MS | FSW = 0.2917
| Unknown | HISTONE H2B PUTATIVE |
| AT1G34065
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2404
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
| AT2G18450
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2591
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
| AT2G13650
| PredictedAffinity Capture-MS | FSW = 0.3221
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| AT4G30990
| PredictedAffinity Capture-MS | FSW = 0.4570
| Unknown | BINDING |
| AT4G33730
| Predictedbiochemical | FSW = 0.0122
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.4972
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT2G24040
| PredictedAffinity Capture-MS | FSW = 0.4012
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
| AT4G10920
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1246
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.4258
| Unknown | PSF2 |
| AT4G29430
| PredictedAffinity Capture-MS | FSW = 0.1739
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G05910
| PredictedAffinity Capture-MS | FSW = 0.1630
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
| AT1G05785
| PredictedAffinity Capture-MS | FSW = 0.1940
| Unknown | GOT1-LIKE FAMILY PROTEIN |
| AT1G14310
| PredictedAffinity Capture-MS | FSW = 0.2647
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G53900
| PredictedAffinity Capture-MS | FSW = 0.0961
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
| AT1G63370
| PredictedAffinity Capture-MS | FSW = 0.1399
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
| AT2G16740
| PredictedAffinity Capture-MS | FSW = 0.2355
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G20000
| Predictedbiochemical | FSW = 0.0036
| Unknown | HBT (HOBBIT) BINDING |
| AT2G47760
| PredictedAffinity Capture-MS | FSW = 0.1249
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
| AT3G03590
| PredictedAffinity Capture-MS | FSW = 0.1340
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT3G12200
| PredictedAffinity Capture-MS | FSW = 0.0583
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT3G20650
| PredictedAffinity Capture-MS | FSW = 0.2015
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.5620
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G52390
| PredictedAffinity Capture-MS | FSW = 0.4469
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT3G53510
| PredictedAffinity Capture-MS | FSW = 0.2083
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
| AT4G21800
| PredictedAffinity Capture-MS | FSW = 0.0371
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
| AT5G02560
| PredictedAffinity Capture-MS | FSW = 0.0683
| Unknown | HTA12 DNA BINDING |
| AT5G16290
| PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
| AT5G46150
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2405
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
| AT5G54200
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3533
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT5G67380
| PredictedAffinity Capture-MS | FSW = 0.2202
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT1G24706
| PredictedAffinity Capture-MS | FSW = 0.1292
| Unknown | UNKNOWN PROTEIN |
| AT1G33770
| PredictedAffinity Capture-MS | FSW = 0.1373
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT1G55730
| PredictedAffinity Capture-MS | FSW = 0.5042
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
| AT1G62880
| PredictedAffinity Capture-MS | FSW = 0.4130
| Unknown | CORNICHON FAMILY PROTEIN |
| AT2G19910
| PredictedAffinity Capture-MS | FSW = 0.2585
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G21250
| PredictedAffinity Capture-MS | FSW = 0.3659
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT2G35390
| PredictedAffinity Capture-MS | FSW = 0.1220
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.3547
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G12690
| PredictedAffinity Capture-MS | FSW = 0.3323
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.2959
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G30842
| PredictedAffinity Capture-MS | FSW = 0.2550
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G62770
| PredictedAffinity Capture-MS | FSW = 0.2905
| Unknown | ATATG18A |
| AT4G11330
| PredictedAffinity Capture-MS | FSW = 0.0645
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.4696
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G19820
| PredictedAffinity Capture-MS | FSW = 0.2573
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.3907
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT4G21660
| Predictedinterologs mapping | FSW = 0.0034
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT5G16260
| PredictedSynthetic Rescue | FSW = 0.0081
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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