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AT5G54840 - ( SGP1 GTP binding )

106 Proteins interacs with AT5G54840

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G14880	Predicted Affinity Capture-MS	FSW = 0.0180	Class C: nucleus	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE
AT4G34870	Predicted Affinity Capture-MS	FSW = 0.0234	Class C: nucleus	ROC5 (ROTAMASE CYCLOPHILIN 5) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G16950	Predicted Affinity Capture-MS	FSW = 0.0207	Class C: nucleus	LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT5G22330	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0129	Class C: nucleus	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.0324	Class C: nucleus	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G10730	Predicted Colocalization	FSW = 0.0205	Class C: nucleus	SAD1/UNC-84-LIKE 2 FAMILY PROTEIN
AT4G28860	Predicted Affinity Capture-MS	FSW = 0.0085	Class C: nucleus	CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G37680	Predicted Affinity Capture-MS	FSW = 0.0245	Class C: nucleus	CONTAINS INTERPRO DOMAIN/S VACUOLAR IMPORT AND DEGRADATION PROTEIN VID24 (INTERPROIPR018618) HAS 214 BLAST HITS TO 214 PROTEINS IN 84 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 57 FUNGI - 124 PLANTS - 31 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK)
AT3G21700	Predicted Phylogenetic profile method Co-expression	FSW = 0.3951	Class C: nucleus	SGP2 GTP BINDING
AT3G13920	Predicted Affinity Capture-MS	FSW = 0.0146	Class C: nucleus	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT1G09060	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Reconstituted Complex	FSW = 0.1140	Class C: nucleus	TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN
AT4G30220	Predicted interaction prediction two hybrid	FSW = 0.0054	Class C: nucleus	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT5G15550	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0159	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G18040	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0384	Class C: nucleus	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT5G63400	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0102	Unknown	ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT3G13530	Predicted Affinity Capture-Western Reconstituted Complex Affinity Capture-Western interologs mapping interologs mapping Affinity Capture-Western two hybrid Affinity Capture-Western two hybrid Synthetic Lethality	FSW = 0.0577	Unknown	MAPKKK7 ATP BINDING / BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G54270	Predicted interaction prediction	FSW = 0.0175	Unknown	EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT1G12840	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0149	Unknown	DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT5G10350	Predicted Affinity Capture-Western Affinity Capture-Western Reconstituted Complex two hybrid	FSW = 0.0278	Unknown	POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT3G49360	Predicted interologs mapping	FSW = 0.0193	Unknown	GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE FAMILY PROTEIN
AT5G60160	Predicted two hybrid	FSW = 0.0093	Unknown	ASPARTYL AMINOPEPTIDASE PUTATIVE
AT3G22110	Predicted Synthetic Rescue	FSW = 0.0175	Unknown	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G55190	Predicted two hybrid interologs mapping interaction prediction	FSW = 0.0051	Unknown	PRA7
AT4G16210	Predicted interologs mapping interaction prediction	FSW = 0.0163	Unknown	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) CATALYTIC
AT1G07890	Predicted Synthetic Rescue Synthetic Rescue	FSW = 0.0202	Unknown	APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT3G52140	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0194	Unknown	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT5G54770	Predicted interaction prediction	FSW = 0.0123	Unknown	THI1 PROTEIN HOMODIMERIZATION
AT4G08870	Predicted interaction prediction interologs mapping	FSW = 0.0109	Unknown	ARGINASE PUTATIVE
AT3G59760	Predicted interaction prediction	FSW = 0.0117	Unknown	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE
AT1G69740	Predicted interaction prediction two hybrid interologs mapping	FSW = 0.0061	Unknown	HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE
AT2G29690	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1473	Unknown	ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE
AT4G23430	Predicted Synthetic Lethality	FSW = 0.0143	Unknown	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G37690	Predicted interaction prediction	FSW = 0.0126	Unknown	PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PUTATIVE / AIR CARBOXYLASE PUTATIVE
AT2G17265	Predicted two hybrid interologs mapping interaction prediction	FSW = 0.0182	Unknown	HSK (HOMOSERINE KINASE) HOMOSERINE KINASE
AT4G38740	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0103	Unknown	ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G14120	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0581	Unknown	DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT3G03330	Predicted Affinity Capture-MS	FSW = 0.0218	Unknown	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G43670	Predicted interaction prediction two hybrid	FSW = 0.0388	Unknown	FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE
AT5G17310	Predicted two hybrid interologs mapping interaction prediction	FSW = 0.0046	Unknown	UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE
AT1G30230	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0388	Unknown	ELONGATION FACTOR 1-BETA / EF-1-BETA
AT1G56330	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0061	Unknown	ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING
AT1G57720	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0419	Unknown	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT3G25540	Predicted interaction prediction	FSW = 0.0117	Unknown	LAG1
AT1G14980	Predicted interaction prediction two hybrid two hybrid	FSW = 0.0172	Unknown	CPN10 (CHAPERONIN 10) CHAPERONE BINDING
AT2G17130	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0637	Unknown	IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT3G61530	Predicted interaction prediction two hybrid interologs mapping	FSW = 0.0164	Unknown	PANB2 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
AT4G23900	Predicted Affinity Capture-MS two hybrid interaction prediction	FSW = 0.0054	Unknown	NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4)
AT5G65750	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0051	Unknown	2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE
AT1G72480	Predicted interologs mapping	FSW = 0.0108	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT1G30000	Predicted two hybrid interaction prediction	FSW = 0.0320	Unknown	GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN
AT5G26710	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0175	Unknown	GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE
AT3G45280	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Reconstituted Complex	FSW = 0.1565	Unknown	SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER
AT2G17640	Predicted two hybrid	FSW = 0.0210	Unknown	ATSERAT31 ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE
AT2G31200	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0128	Unknown	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING
AT5G03340	Predicted Affinity Capture-MS	FSW = 0.0118	Unknown	CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE
AT2G21790	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0354	Unknown	RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AT5G45550	Predicted interologs mapping	FSW = 0.0193	Unknown	MOB1/PHOCEIN FAMILY PROTEIN
AT5G14800	Predicted interaction prediction	FSW = 0.0113	Unknown	P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE
AT5G53350	Predicted Affinity Capture-MS	FSW = 0.0172	Unknown	CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G27070	Predicted Affinity Capture-MS	FSW = 0.0096	Unknown	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT2G45790	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0117	Unknown	PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE
AT1G04170	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0057	Unknown	EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G13580	Predicted two hybrid	FSW = 0.0143	Unknown	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G17720	Predicted Phenotypic Suppression interologs mapping	FSW = 0.0313	Unknown	ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G20920	Predicted Affinity Capture-MS	FSW = 0.0300	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT1G24290	Predicted two hybrid interaction prediction	FSW = 0.0082	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G34580	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Affinity Capture-MS two hybrid two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western two hybrid co-fractionation Co-fractionation interologs mapping	FSW = 0.0659	Unknown	MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G71280	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0394	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G03820	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0186	Unknown	NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT2G16950	Predicted Synthetic Rescue	FSW = 0.0129	Unknown	TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G20280	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Synthetic Lethality	FSW = 0.1079	Unknown	ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT2G21250	Predicted Affinity Capture-MS	FSW = 0.0080	Unknown	MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G22480	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0203	Unknown	PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE
AT2G35390	Predicted two hybrid	FSW = 0.0198	Unknown	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G38600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0760	Unknown	ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT3G08650	Predicted Synthetic Rescue	FSW = 0.0251	Unknown	METAL TRANSPORTER FAMILY PROTEIN
AT3G27060	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0375	Unknown	TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING
AT3G46940	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0149	Unknown	DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE FAMILY
AT4G04210	Predicted Affinity Capture-MS	FSW = 0.0116	Unknown	PUX4 PROTEIN BINDING
AT4G04695	Predicted Synthetic Rescue	FSW = 0.0199	Unknown	CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G02880	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0102	Unknown	UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G12030	Predicted two hybrid	FSW = 0.0252	Unknown	AT-HSP176A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 176A) UNFOLDED PROTEIN BINDING
AT5G13860	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0109	Unknown	ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G16290	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid two hybrid Affinity Capture-Western Affinity Capture-MS two hybrid Affinity Capture-Western Synthetic Lethality	FSW = 0.1179	Unknown	ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE
AT5G24840	Predicted Affinity Capture-MS Synthetic Lethality	FSW = 0.0074	Unknown	TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G35980	Predicted interologs mapping	FSW = 0.0290	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT5G51970	Predicted interaction prediction two hybrid	FSW = 0.0218	Unknown	SORBITOL DEHYDROGENASE PUTATIVE / L-IDITOL 2-DEHYDROGENASE PUTATIVE
AT1G18610	Predicted Affinity Capture-Western	FSW = 0.0218	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G741501) HAS 8761 BLAST HITS TO 4412 PROTEINS IN 271 SPECIES ARCHAE - 12 BACTERIA - 304 METAZOA - 4209 FUNGI - 851 PLANTS - 1246 VIRUSES - 11 OTHER EUKARYOTES - 2128 (SOURCE NCBI BLINK)
AT3G15460	Predicted Reconstituted Complex	FSW = 0.0506	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G27000	Predicted Synthetic Lethality	FSW = 0.0080	Unknown	ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G48180	Predicted Affinity Capture-Western	FSW = 0.0234	Unknown	NSP5 (NITRILE SPECIFIER PROTEIN 5)
AT5G66360	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1408	Unknown	RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN
AT5G65900	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0059	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G20860	Predicted interologs mapping interaction prediction	FSW = 0.0122	Unknown	ATNEK5 (NIMA-RELATED KINASE5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G53570	Predicted interaction prediction	FSW = 0.0768	Unknown	MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G07400	Predicted interaction prediction	FSW = 0.0231	Unknown	178 KDA CLASS I HEAT SHOCK PROTEIN (HSP178-CI)
AT3G13700	Predicted interaction prediction	FSW = 0.0136	Unknown	RNA-BINDING PROTEIN PUTATIVE
AT3G07270	Predicted interaction prediction	FSW = 0.0288	Unknown	GTP CYCLOHYDROLASE I
AT1G60680	Predicted interaction prediction	FSW = 0.0060	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT3G27440	Predicted interaction prediction	FSW = 0.0128	Unknown	URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT4G26780	Predicted interaction prediction	FSW = 0.0131	Unknown	AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION
AT3G26500	Predicted interaction prediction	FSW = 0.0223	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN
AT5G55810	Predicted interaction prediction	FSW = 0.0204	Unknown	ATNMNAT (A THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE) NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE/ NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE
AT5G55130	Predicted interaction prediction	FSW = 0.0218	Unknown	CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE
AT3G19420	Predicted interaction prediction	FSW = 0.0283	Unknown	ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE
AT1G33360	Predicted interaction prediction	FSW = 0.0327	Unknown	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT5G54840 - ( SGP1 GTP binding )

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