Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G54840 - ( SGP1 GTP binding )
106 Proteins interacs with AT5G54840Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14880 | PredictedAffinity Capture-MS | FSW = 0.0180
| Class C:nucleus | OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE |
AT4G34870 | PredictedAffinity Capture-MS | FSW = 0.0234
| Class C:nucleus | ROC5 (ROTAMASE CYCLOPHILIN 5) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0207
| Class C:nucleus | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G22330 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0129
| Class C:nucleus | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0324
| Class C:nucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G10730 | PredictedColocalization | FSW = 0.0205
| Class C:nucleus | SAD1/UNC-84-LIKE 2 FAMILY PROTEIN |
AT4G28860 | PredictedAffinity Capture-MS | FSW = 0.0085
| Class C:nucleus | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G37680 | PredictedAffinity Capture-MS | FSW = 0.0245
| Class C:nucleus | CONTAINS INTERPRO DOMAIN/S VACUOLAR IMPORT AND DEGRADATION PROTEIN VID24 (INTERPROIPR018618) HAS 214 BLAST HITS TO 214 PROTEINS IN 84 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 57 FUNGI - 124 PLANTS - 31 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT3G21700 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3951
| Class C:nucleus | SGP2 GTP BINDING |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0146
| Class C:nucleus | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G09060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.1140
| Class C:nucleus | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT4G30220 | Predictedinteraction predictiontwo hybrid | FSW = 0.0054
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT5G15550 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0159
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G18040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0384
| Class C:nucleus | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT5G63400 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0102
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G13530 | PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-Westerninterologs mappinginterologs mappingAffinity Capture-Westerntwo hybridAffinity Capture-Westerntwo hybridSynthetic Lethality | FSW = 0.0577
| Unknown | MAPKKK7 ATP BINDING / BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G54270 | Predictedinteraction prediction | FSW = 0.0175
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G12840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0149
| Unknown | DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G10350 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.0278
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G49360 | Predictedinterologs mapping | FSW = 0.0193
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE FAMILY PROTEIN |
AT5G60160 | Predictedtwo hybrid | FSW = 0.0093
| Unknown | ASPARTYL AMINOPEPTIDASE PUTATIVE |
AT3G22110 | PredictedSynthetic Rescue | FSW = 0.0175
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G55190 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0051
| Unknown | PRA7 |
AT4G16210 | Predictedinterologs mappinginteraction prediction | FSW = 0.0163
| Unknown | ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) CATALYTIC |
AT1G07890 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0202
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT3G52140 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0194
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G54770 | Predictedinteraction prediction | FSW = 0.0123
| Unknown | THI1 PROTEIN HOMODIMERIZATION |
AT4G08870 | Predictedinteraction predictioninterologs mapping | FSW = 0.0109
| Unknown | ARGINASE PUTATIVE |
AT3G59760 | Predictedinteraction prediction | FSW = 0.0117
| Unknown | OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE |
AT1G69740 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0061
| Unknown | HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE |
AT2G29690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1473
| Unknown | ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE |
AT4G23430 | PredictedSynthetic Lethality | FSW = 0.0143
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G37690 | Predictedinteraction prediction | FSW = 0.0126
| Unknown | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PUTATIVE / AIR CARBOXYLASE PUTATIVE |
AT2G17265 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0182
| Unknown | HSK (HOMOSERINE KINASE) HOMOSERINE KINASE |
AT4G38740 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0103
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G14120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0581
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT3G03330 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G43670 | Predictedinteraction predictiontwo hybrid | FSW = 0.0388
| Unknown | FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE |
AT5G17310 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0046
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT1G30230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0388
| Unknown | ELONGATION FACTOR 1-BETA / EF-1-BETA |
AT1G56330 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0061
| Unknown | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING |
AT1G57720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0419
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT3G25540 | Predictedinteraction prediction | FSW = 0.0117
| Unknown | LAG1 |
AT1G14980 | Predictedinteraction predictiontwo hybridtwo hybrid | FSW = 0.0172
| Unknown | CPN10 (CHAPERONIN 10) CHAPERONE BINDING |
AT2G17130 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0637
| Unknown | IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT3G61530 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0164
| Unknown | PANB2 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
AT4G23900 | PredictedAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.0054
| Unknown | NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4) |
AT5G65750 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0051
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT1G72480 | Predictedinterologs mapping | FSW = 0.0108
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT1G30000 | Predictedtwo hybridinteraction prediction | FSW = 0.0320
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT5G26710 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0175
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT3G45280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.1565
| Unknown | SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER |
AT2G17640 | Predictedtwo hybrid | FSW = 0.0210
| Unknown | ATSERAT31 ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
AT2G31200 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0128
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT5G03340 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT2G21790 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0354
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT5G45550 | Predictedinterologs mapping | FSW = 0.0193
| Unknown | MOB1/PHOCEIN FAMILY PROTEIN |
AT5G14800 | Predictedinteraction prediction | FSW = 0.0113
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT5G53350 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G27070 | PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT2G45790 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0117
| Unknown | PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE |
AT1G04170 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0057
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G13580 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G17720 | PredictedPhenotypic Suppressioninterologs mapping | FSW = 0.0313
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G24290 | Predictedtwo hybridinteraction prediction | FSW = 0.0082
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-MStwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Westerntwo hybridco-fractionationCo-fractionationinterologs mapping | FSW = 0.0659
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G71280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0394
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G03820 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0186
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT2G16950 | PredictedSynthetic Rescue | FSW = 0.0129
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT2G20280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1079
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G22480 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0203
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT2G35390 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G38600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0760
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT3G08650 | PredictedSynthetic Rescue | FSW = 0.0251
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT3G27060 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0375
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT3G46940 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0149
| Unknown | DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE FAMILY |
AT4G04210 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | PUX4 PROTEIN BINDING |
AT4G04695 | PredictedSynthetic Rescue | FSW = 0.0199
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G02880 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0102
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
AT5G12030 | Predictedtwo hybrid | FSW = 0.0252
| Unknown | AT-HSP176A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 176A) UNFOLDED PROTEIN BINDING |
AT5G13860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0109
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G16290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-WesternSynthetic Lethality | FSW = 0.1179
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT5G24840 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0074
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G35980 | Predictedinterologs mapping | FSW = 0.0290
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G51970 | Predictedinteraction predictiontwo hybrid | FSW = 0.0218
| Unknown | SORBITOL DEHYDROGENASE PUTATIVE / L-IDITOL 2-DEHYDROGENASE PUTATIVE |
AT1G18610 | PredictedAffinity Capture-Western | FSW = 0.0218
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G741501) HAS 8761 BLAST HITS TO 4412 PROTEINS IN 271 SPECIES ARCHAE - 12 BACTERIA - 304 METAZOA - 4209 FUNGI - 851 PLANTS - 1246 VIRUSES - 11 OTHER EUKARYOTES - 2128 (SOURCE NCBI BLINK) |
AT3G15460 | PredictedReconstituted Complex | FSW = 0.0506
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0080
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G48180 | PredictedAffinity Capture-Western | FSW = 0.0234
| Unknown | NSP5 (NITRILE SPECIFIER PROTEIN 5) |
AT5G66360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1408
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
AT5G65900 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0059
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G20860 | Predictedinterologs mappinginteraction prediction | FSW = 0.0122
| Unknown | ATNEK5 (NIMA-RELATED KINASE5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G53570 | Predictedinteraction prediction | FSW = 0.0768
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G07400 | Predictedinteraction prediction | FSW = 0.0231
| Unknown | 178 KDA CLASS I HEAT SHOCK PROTEIN (HSP178-CI) |
AT3G13700 | Predictedinteraction prediction | FSW = 0.0136
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT3G07270 | Predictedinteraction prediction | FSW = 0.0288
| Unknown | GTP CYCLOHYDROLASE I |
AT1G60680 | Predictedinteraction prediction | FSW = 0.0060
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G27440 | Predictedinteraction prediction | FSW = 0.0128
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G26780 | Predictedinteraction prediction | FSW = 0.0131
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
AT3G26500 | Predictedinteraction prediction | FSW = 0.0223
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G55810 | Predictedinteraction prediction | FSW = 0.0204
| Unknown | ATNMNAT (A THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE) NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE/ NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE |
AT5G55130 | Predictedinteraction prediction | FSW = 0.0218
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT3G19420 | Predictedinteraction prediction | FSW = 0.0283
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT1G33360 | Predictedinteraction prediction | FSW = 0.0327
| Unknown | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454