Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G14800 - ( P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) pyrroline-5-carboxylate reductase )
25 Proteins interacs with AT5G14800Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G30860![]() ![]() ![]() ![]() | PredictedPhenotypic Suppression | FSW = 0.0238
| Unknown | ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE PEROXIDASE/ GLUTATHIONE TRANSFERASE |
AT1G56070![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT5G25780![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0197
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT4G21210![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.0571
| Unknown | ATRP1 (PPDK REGULATORY PROTEIN) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE |
AT5G53480![]() ![]() ![]() ![]() | Predictedtwo hybridinteraction prediction | FSW = 0.0516
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT2G04390![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0114
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT4G26110![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT3G43810![]() ![]() ![]() ![]() | PredictedReconstituted Complexinteraction prediction | FSW = 0.0097
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410![]() ![]() ![]() ![]() | PredictedReconstituted Complex | FSW = 0.0063
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT2G19480![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT5G48370![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0381
| Unknown | THIOESTERASE FAMILY PROTEIN |
AT5G54840![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.0113
| Unknown | SGP1 GTP BINDING |
AT3G21700![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0161
| Unknown | SGP2 GTP BINDING |
AT3G06720![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.0338
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G15870![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT5G02050![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0154
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT4G06634![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0593
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT5G45190![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0095
| Unknown | CYCLIN FAMILY PROTEIN |
AT1G79990![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0143
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT3G07300![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0130
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT4G15770![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0153
| Unknown | RNA BINDING / PROTEIN BINDING |
AT1G52360![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G54390![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0474
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G02690![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0479
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT5G46180![]() ![]() ![]() ![]() | PredictedShared biological functionGene neighbors methodCo-expression | FSW = 0.0229
| Unknown | DELTA-OAT ORNITHINE-OXO-ACID TRANSAMINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454