Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79990 - ( LOCATED IN endomembrane system COPI vesicle coat Golgi membrane EXPRESSED IN 25 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s SYS1 homologue (InterProIPR016973) Has 55556 Blast hits to 24059 proteins in 620 species Archae - 38 Bacteria - 5697 Metazoa - 25539 Fungi - 10898 Plants - 5309 Viruses - 0 Other Eukaryotes - 8075 (source NCBI BLink) )
83 Proteins interacs with AT1G79990Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G13490 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0312
| Unknown | AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING |
AT5G66680 | PredictedProtein-peptide | FSW = 0.0634
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT3G62290 | PredictedPhenotypic Suppressioninterologs mappinginteraction prediction | FSW = 0.1132
| Unknown | ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT2G27020 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0088
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G31780 | PredictedPhenotypic Enhancement | FSW = 0.1394
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | PredictedPhenotypic Enhancement | FSW = 0.1089
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT4G31490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.1520
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0170
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT4G04910 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0706
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G36880 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
AT3G12780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0312
| Unknown | PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE |
AT5G63840 | PredictedPhenotypic Enhancement | FSW = 0.0683
| Unknown | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G10920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0415
| Unknown | ARGININOSUCCINATE LYASE PUTATIVE / ARGINOSUCCINASE PUTATIVE |
AT2G40490 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | HEME2 UROPORPHYRINOGEN DECARBOXYLASE |
AT1G59820 | PredictedPhenotypic Enhancement | FSW = 0.0626
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT1G11890 | Predictedinterologs mappingAffinity Capture-Westerninteraction prediction | FSW = 0.1359
| Unknown | SEC22 TRANSPORTER |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0498
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G62020 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivoin vivoAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.2191
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT3G11400 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0173
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT4G24630 | PredictedPhenotypic Suppression | FSW = 0.0115
| Unknown | RECEPTOR/ ZINC ION BINDING |
AT1G65040 | PredictedPhenotypic Enhancement | FSW = 0.0464
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G62740 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0410
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT1G57720 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0400
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT4G24820 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0132
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT5G19330 | PredictedPhenotypic Enhancement | FSW = 0.0123
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT5G20890 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0468
| Unknown | CHAPERONIN PUTATIVE |
AT2G17520 | Predictedinterologs mapping | FSW = 0.0975
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G75560 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G59900 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0197
| Unknown | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT4G35260 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G26710 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT3G05710 | PredictedPhenotypic Enhancement | FSW = 0.1324
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G01020 | PredictedPhenotypic Enhancement | FSW = 0.0698
| Unknown | ARV1 |
AT3G02530 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0348
| Unknown | CHAPERONIN PUTATIVE |
AT2G31970 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0076
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT2G34840 | Predictedin vivotwo hybrid | FSW = 0.1065
| Unknown | COATOMER PROTEIN EPSILON SUBUNIT FAMILY PROTEIN / COPE FAMILY PROTEIN |
AT1G79750 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0165
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT5G20570 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0262
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G58290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0339
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G54260 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G14800 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0143
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT3G20050 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0347
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT5G05010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivointeraction prediction | FSW = 0.1498
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT-RELATED |
AT1G01910 | PredictedPhenotypic Enhancement | FSW = 0.1212
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G57620 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0197
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G60970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1498
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT1G68650 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | UNKNOWN PROTEIN |
AT1G02080 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0291
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT1G05785 | PredictedPhenotypic Enhancement | FSW = 0.0683
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G16560 | PredictedPhenotypic Enhancement | FSW = 0.0926
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G48760 | PredictedPhenotypic Enhancement | FSW = 0.1244
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G60620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0278
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.1420
| Unknown | CATALYTIC/ TRANSFERASE |
AT2G32600 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0117
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT2G34770 | PredictedPhenotypic Enhancement | FSW = 0.1111
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G37550 | PredictedPhenotypic Enhancement | FSW = 0.0435
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0348
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.2443
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G50860 | PredictedPhenotypic Enhancement | FSW = 0.1366
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT4G16970 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G17890 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1855
| Unknown | AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT4G21540 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0468
| Unknown | SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE |
AT4G22540 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) OXYSTEROL BINDING / PHOSPHOINOSITIDE BINDING |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0623
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G52210 | PredictedPhenotypic Enhancement | FSW = 0.1013
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G64670 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0347
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT2G15790 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0208
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G19170 | PredictedAffinity Capture-MS | FSW = 0.0535
| Unknown | SLP3 SERINE-TYPE PEPTIDASE |
AT2G32260 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0251
| Unknown | CHOLINEPHOSPHATE CYTIDYLYLTRANSFERASE PUTATIVE / PHOSPHORYLCHOLINE TRANSFERASE PUTATIVE / CTPPHOSPHOCHOLINE CYTIDYLYLTRANSFERASE PUTATIVE |
AT2G46280 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0291
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G27060 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0133
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT3G58180 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0516
| Unknown | PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN |
AT4G00660 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0204
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G26550 | PredictedPhenotypic Enhancement | FSW = 0.1161
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK) |
AT4G34450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1846
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT5G10050 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0404
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G18200 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0257
| Unknown | UTPGALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ RIBOSE-5-PHOSPHATE ADENYLYLTRANSFERASE |
AT5G46750 | Predictedinteraction prediction | FSW = 0.0798
| Unknown | AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT4G31480 | Predictedinteraction prediction | FSW = 0.1742
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
AT3G15980 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0414
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G52360 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6312
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT5G23720 | PredictedGene fusion method | FSW = 0.0266
| Unknown | PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454