Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79990 - ( LOCATED IN endomembrane system COPI vesicle coat Golgi membrane EXPRESSED IN 25 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s SYS1 homologue (InterProIPR016973) Has 55556 Blast hits to 24059 proteins in 620 species Archae - 38 Bacteria - 5697 Metazoa - 25539 Fungi - 10898 Plants - 5309 Viruses - 0 Other Eukaryotes - 8075 (source NCBI BLink) )

83 Proteins interacs with AT1G79990
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G13490

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0312

Unknown

AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING
AT5G66680

Predicted

Protein-peptide

FSW = 0.0634

Unknown

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT3G62290

Predicted

Phenotypic Suppression

interologs mapping

interaction prediction

FSW = 0.1132

Unknown

ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT2G27020

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0088

Unknown

PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G31780

Predicted

Phenotypic Enhancement

FSW = 0.1394

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT2G45200

Predicted

Phenotypic Enhancement

FSW = 0.1089

Unknown

GOS12 (GOLGI SNARE 12) SNARE BINDING
AT4G31490

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

FSW = 0.1520

Unknown

COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0170

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT4G04910

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0706

Unknown

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G36880

Predicted

Affinity Capture-MS

FSW = 0.0281

Unknown

ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE
AT3G12780

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0312

Unknown

PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT5G63840

Predicted

Phenotypic Enhancement

FSW = 0.0683

Unknown

RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G10920

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0415

Unknown

ARGININOSUCCINATE LYASE PUTATIVE / ARGINOSUCCINASE PUTATIVE
AT2G40490

Predicted

Affinity Capture-MS

FSW = 0.0257

Unknown

HEME2 UROPORPHYRINOGEN DECARBOXYLASE
AT1G59820

Predicted

Phenotypic Enhancement

FSW = 0.0626

Unknown

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT1G11890

Predicted

interologs mapping

Affinity Capture-Western

interaction prediction

FSW = 0.1359

Unknown

SEC22 TRANSPORTER
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0498

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G62020

Predicted

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

in vivo

in vivo

Affinity Capture-MS

Synthetic Lethality

interaction prediction

FSW = 0.2191

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE
AT3G11400

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0173

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G
AT4G24630

Predicted

Phenotypic Suppression

FSW = 0.0115

Unknown

RECEPTOR/ ZINC ION BINDING
AT1G65040

Predicted

Phenotypic Enhancement

FSW = 0.0464

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G62740

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0410

Unknown

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT1G57720

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0400

Unknown

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT4G24820

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0132

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT5G19330

Predicted

Phenotypic Enhancement

FSW = 0.0123

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT5G20890

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0468

Unknown

CHAPERONIN PUTATIVE
AT2G17520

Predicted

interologs mapping

FSW = 0.0975

Unknown

IRE1A ENDORIBONUCLEASE/ KINASE
AT1G75560

Predicted

Affinity Capture-MS

FSW = 0.0251

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT1G59900

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0197

Unknown

AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT4G35260

Predicted

Affinity Capture-MS

FSW = 0.0218

Unknown

IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G26710

Predicted

Affinity Capture-MS

FSW = 0.0308

Unknown

GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE
AT3G05710

Predicted

Phenotypic Enhancement

FSW = 0.1324

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT1G01020

Predicted

Phenotypic Enhancement

FSW = 0.0698

Unknown

ARV1
AT3G02530

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0348

Unknown

CHAPERONIN PUTATIVE
AT2G31970

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0076

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT2G34840

Predicted

in vivo

two hybrid

FSW = 0.1065

Unknown

COATOMER PROTEIN EPSILON SUBUNIT FAMILY PROTEIN / COPE FAMILY PROTEIN
AT1G79750

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0165

Unknown

ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT5G20570

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0262

Unknown

RBX1 (RING-BOX 1) PROTEIN BINDING
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0163

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G58290

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0339

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT5G54260

Predicted

Affinity Capture-MS

FSW = 0.0134

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G14800

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0143

Unknown

P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE
AT3G20050

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0347

Unknown

ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT5G05010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

in vivo

interaction prediction

FSW = 0.1498

Unknown

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT-RELATED
AT1G01910

Predicted

Phenotypic Enhancement

FSW = 0.1212

Unknown

ANION-TRANSPORTING ATPASE PUTATIVE
AT1G57620

Predicted

Phenotypic Enhancement

Affinity Capture-MS

FSW = 0.0197

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G60970

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1498

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT1G68650

Predicted

Affinity Capture-MS

FSW = 0.0345

Unknown

UNKNOWN PROTEIN
AT1G02080Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0291

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT1G05785

Predicted

Phenotypic Enhancement

FSW = 0.0683

Unknown

GOT1-LIKE FAMILY PROTEIN
AT1G16560

Predicted

Phenotypic Enhancement

FSW = 0.0926

Unknown

PER1-LIKE FAMILY PROTEIN
AT1G48760

Predicted

Phenotypic Enhancement

FSW = 0.1244

Unknown

DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G60620

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0278

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G22530

Predicted

Phenotypic Enhancement

FSW = 0.1420

Unknown

CATALYTIC/ TRANSFERASE
AT2G32600

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0117

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT2G34770

Predicted

Phenotypic Enhancement

FSW = 0.1111

Unknown

FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT2G37550

Predicted

Phenotypic Enhancement

FSW = 0.0435

Unknown

AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.0348

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT3G12180

Predicted

Phenotypic Enhancement

FSW = 0.2443

Unknown

CORNICHON FAMILY PROTEIN
AT3G50860

Predicted

Phenotypic Enhancement

FSW = 0.1366

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT4G16970

Predicted

Affinity Capture-MS

FSW = 0.0262

Unknown

ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G17890

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1855

Unknown

AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT4G21540

Predicted

Phenotypic Enhancement

Affinity Capture-MS

FSW = 0.0468

Unknown

SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE
AT4G22540

Predicted

Affinity Capture-MS

FSW = 0.0230

Unknown

ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) OXYSTEROL BINDING / PHOSPHOINOSITIDE BINDING
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.0623

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G52210

Predicted

Phenotypic Enhancement

FSW = 0.1013

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G64670

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0347

Unknown

RIBOSOMAL PROTEIN L15 FAMILY PROTEIN
AT2G15790

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0208

Unknown

SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G19170

Predicted

Affinity Capture-MS

FSW = 0.0535

Unknown

SLP3 SERINE-TYPE PEPTIDASE
AT2G32260

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0251

Unknown

CHOLINEPHOSPHATE CYTIDYLYLTRANSFERASE PUTATIVE / PHOSPHORYLCHOLINE TRANSFERASE PUTATIVE / CTPPHOSPHOCHOLINE CYTIDYLYLTRANSFERASE PUTATIVE
AT2G46280

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0291

Unknown

TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G27060

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0133

Unknown

TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING
AT3G58180

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0516

Unknown

PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN
AT4G00660

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0204

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT4G26550

Predicted

Phenotypic Enhancement

FSW = 0.1161

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK)
AT4G34450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1846

Unknown

COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE
AT5G10050

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0404

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT5G18200

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0257

Unknown

UTPGALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ RIBOSE-5-PHOSPHATE ADENYLYLTRANSFERASE
AT5G46750

Predicted

interaction prediction

FSW = 0.0798

Unknown

AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT4G31480

Predicted

interaction prediction

FSW = 0.1742

Unknown

COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT3G15980

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0414

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G52360

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6312

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT5G23720

Predicted

Gene fusion method

FSW = 0.0266

Unknown

PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454