Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79750 - ( ATNADP-ME4 (NADP-malic enzyme 4) malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase acting on NADH or NADPH NAD or NADP as acceptor )

62 Proteins interacs with AT1G79750
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

Affinity Capture-MS

FSW = 0.0718

Unknown

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G20010

Predicted

Affinity Capture-MS

FSW = 0.0806

Unknown

TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G11670

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1391

Unknown

ATNADP-ME2 (NADP-MALIC ENZYME 2) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT1G78900

Predicted

Affinity Capture-MS

FSW = 0.0216

Unknown

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G07660Predicted

Affinity Capture-MS

FSW = 0.0591

Unknown

HISTONE H4
AT1G04820Predicted

Affinity Capture-MS

FSW = 0.0914

Unknown

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G51260

Predicted

Affinity Capture-MS

FSW = 0.0591

Unknown

PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G56070

Predicted

Affinity Capture-MS

FSW = 0.1112

Unknown

LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT3G28715

Predicted

interaction prediction

FSW = 0.0119

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT3G28710

Predicted

two hybrid

FSW = 0.0175

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT1G64790Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1109

Unknown

BINDING
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.0163

Unknown

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G19980

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0223

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G72370

Predicted

Affinity Capture-MS

FSW = 0.0538

Unknown

P40 STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G52140Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0736

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT5G67630

Predicted

Affinity Capture-MS

FSW = 0.1521

Unknown

DNA HELICASE PUTATIVE
AT5G59690Predicted

Affinity Capture-MS

FSW = 0.0565

Unknown

HISTONE H4
AT2G13560

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1739

Unknown

MALATE OXIDOREDUCTASE PUTATIVE
AT4G00570

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1605

Unknown

MALATE OXIDOREDUCTASE PUTATIVE
AT1G29900

Predicted

Affinity Capture-MS

FSW = 0.0672

Unknown

CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC
AT2G45300

Predicted

Affinity Capture-MS

FSW = 0.0735

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT3G10050

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1142

Unknown

OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE
AT1G48860

Predicted

Affinity Capture-MS

FSW = 0.0413

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT2G34460

Predicted

two hybrid

FSW = 0.0146

Unknown

FLAVIN REDUCTASE-RELATED
AT1G67120Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1191

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING
AT3G04770

Predicted

Affinity Capture-MS

FSW = 0.0528

Unknown

RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G49830

Predicted

Affinity Capture-MS

FSW = 0.1994

Unknown

DNA HELICASE-RELATED
AT5G60390

Predicted

Affinity Capture-MS

FSW = 0.0380

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G12250

Predicted

Affinity Capture-MS

FSW = 0.0830

Unknown

TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G26830

Predicted

Affinity Capture-MS

FSW = 0.0130

Unknown

THREONYL-TRNA SYNTHETASE / THREONINE--TRNA LIGASE (THRRS)
AT3G04050

Predicted

Affinity Capture-MS

FSW = 0.0300

Unknown

PYRUVATE KINASE PUTATIVE
AT3G18190

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0387

Unknown

CHAPERONIN PUTATIVE
AT5G63680

Predicted

Affinity Capture-MS

FSW = 0.0438

Unknown

PYRUVATE KINASE PUTATIVE
AT1G36160

Predicted

Affinity Capture-MS

FSW = 0.0668

Unknown

ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE
AT1G04810

Predicted

Affinity Capture-MS

FSW = 0.0978

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G20580

Predicted

Affinity Capture-MS

FSW = 0.0635

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G70320

Predicted

Affinity Capture-MS

FSW = 0.0248

Unknown

UPL2 (UBIQUITIN-PROTEIN LIGASE 2) UBIQUITIN-PROTEIN LIGASE
AT1G55860

Predicted

Affinity Capture-MS

FSW = 0.0160

Unknown

UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE
AT1G13980

Predicted

Affinity Capture-MS

FSW = 0.0123

Unknown

GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION
AT3G02530

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1096

Unknown

CHAPERONIN PUTATIVE
AT4G21710

Predicted

Affinity Capture-MS

FSW = 0.0711

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G64550

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1508

Unknown

ATGCN3 TRANSPORTER
AT1G16280

Predicted

Affinity Capture-MS

FSW = 0.0761

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G79990

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0165

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT5G13520

Predicted

Affinity Capture-MS

FSW = 0.0325

Unknown

PEPTIDASE M1 FAMILY PROTEIN
AT2G32730

Predicted

Affinity Capture-MS

FSW = 0.0884

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.2746

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT3G03110

Predicted

Affinity Capture-MS

FSW = 0.0645

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER
AT3G12670

Predicted

Affinity Capture-MS

FSW = 0.1219

Unknown

EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.0229

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G24090

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1202

Unknown

GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT4G10320

Predicted

Affinity Capture-MS

FSW = 0.0415

Unknown

ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE
AT4G19006

Predicted

Affinity Capture-MS

FSW = 0.0714

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT4G38630

Predicted

Affinity Capture-MS

FSW = 0.0724

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G19610

Predicted

Affinity Capture-MS

FSW = 0.0455

Unknown

SEC7 DOMAIN-CONTAINING PROTEIN
AT5G19820

Predicted

Affinity Capture-MS

FSW = 0.0351

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT1G52360

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G50370

Predicted

Affinity Capture-MS

FSW = 0.0311

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT1G36240

Predicted

Affinity Capture-MS

FSW = 0.0342

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT1G30820

Predicted

Affinity Capture-MS

FSW = 0.1336

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT5G25880

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1605

Unknown

ATNADP-ME3 (NADP-MALIC ENZYME 3) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT2G19900

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1739

Unknown

ATNADP-ME1 (NADP-MALIC ENZYME 1) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454