Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G19980 - ( ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) protein binding / protein serine/threonine kinase/ protein serine/threonine phosphatase )
153 Proteins interacs with AT3G19980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G18790 | Experimentalin vitro | FSW = 0.0069
| Class B:unclearnucleuscytosolClass D:cytosol (p = 0.67) | PHYB (PHYTOCHROME B) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT1G09570 | Experimentalin vitro | FSW = 0.0092
| Class B:unclearnucleuscytosolClass D:cytosol (p = 0.67) | PHYA (PHYTOCHROME A) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT3G01280 | PredictedAffinity Capture-Westerntwo hybridtwo hybridAffinity Capture-WesternCo-purification | FSW = 0.0254
| Class C:unclear | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT2G33120 | Predictedinterologs mapping | FSW = 0.0150
| Class C:unclear | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.5429
| Class C:unclear | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G33040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0123
| Class C:unclear | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
AT1G77590 | PredictedAffinity Capture-MS | FSW = 0.0140
| Class C:unclear | LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9) LONG-CHAIN-FATTY-ACID-COA LIGASE |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.0910
| Class C:unclear | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT4G05020 | PredictedAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.0079
| Class C:unclear | NDB2 (NAD(P)H DEHYDROGENASE B2) FAD BINDING / DISULFIDE OXIDOREDUCTASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.4753
| Class C:unclear | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.5474
| Class C:unclear | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT3G58500 | PredictedSynthetic LethalitySynthetic RescuePhylogenetic profile method | FSW = 0.0530
| Class C:unclear | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.0075
| Unknown | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.4240
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.1134
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.3778
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.5210
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62150 | PredictedAffinity Capture-MS | FSW = 0.1325
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5211
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT4G14800 | PredictedSynthetic Lethality | FSW = 0.0136
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G30470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0273
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT3G63130 | Predictedinterologs mapping | FSW = 0.0056
| Unknown | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.5464
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.4973
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0738
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G53460 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0156
| Unknown | GLT1 GLUTAMATE SYNTHASE (NADH) |
AT5G63890 | Predictedinteraction prediction | FSW = 0.0069
| Unknown | ATHDH (HISTIDINOL DEHYDROGENASE) HISTIDINOL DEHYDROGENASE |
AT4G35800 | PredictedSynthetic Lethality | FSW = 0.0256
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.2038
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.4876
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.2897
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G06040 | PredictedAffinity Capture-MS | FSW = 0.4187
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.3863
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.4234
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.4399
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.4634
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1378
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0507
| Unknown | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.3714
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT1G09840 | Predictedinterologs mapping | FSW = 0.0064
| Unknown | ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G35020 | PredictedSynthetic Lethality | FSW = 0.0079
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.2851
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5519
| Unknown | ZINC ION BINDING |
AT2G42500 | Predictedinterologs mappingPhylogenetic profile method | FSW = 0.0569
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G10430 | PredictedPhylogenetic profile method | FSW = 0.0482
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G03300 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0068
| Unknown | ADK2 (ADENOSINE KINASE 2) ADENOSINE KINASE/ COPPER ION BINDING / KINASE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.4344
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT5G02490 | PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT5G20890 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0200
| Unknown | CHAPERONIN PUTATIVE |
AT1G59830 | PredictedPhylogenetic profile method | FSW = 0.0523
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G50310 | PredictedAffinity Capture-MS | FSW = 0.2472
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.5176
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G00520 | PredictedAffinity Capture-MS | FSW = 0.0498
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.3889
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT5G57015 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0119
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G26720 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0489
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.4719
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT3G50670 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0115
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.4990
| Unknown | HTA6 DNA BINDING |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.4211
| Unknown | HISTONE H2B PUTATIVE |
AT3G14270 | Predictedinteraction prediction | FSW = 0.0033
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT1G28490 | Predictedbiochemical | FSW = 0.0200
| Unknown | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.3934
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.4616
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.3891
| Unknown | BINDING |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.1047
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G05710 | Predictedbiochemical | FSW = 0.0143
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT3G02530 | PredictedAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.0329
| Unknown | CHAPERONIN PUTATIVE |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.1239
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G79750 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0223
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.5305
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G10330 | PredictedAffinity Capture-MS | FSW = 0.0039
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.4659
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.4041
| Unknown | PSF2 |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.4425
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.1000
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G69960 | PredictedPhylogenetic profile method | FSW = 0.0871
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G17620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0036
| Unknown | GLYCINE-RICH PROTEIN |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.5527
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT4G21710 | PredictedSynthetic Lethality | FSW = 0.0178
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G13870 | Predictedco-fractionationCo-fractionation | FSW = 0.0349
| Unknown | DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.2299
| Unknown | UNKNOWN PROTEIN |
AT1G33110 | PredictedAffinity Capture-MS | FSW = 0.4030
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.5828
| Unknown | UNKNOWN PROTEIN |
AT1G59730 | PredictedAffinity Capture-MS | FSW = 0.1255
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.5303
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.5178
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.4744
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.0283
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.3634
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2523
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G20560 | Predictedinterologs mapping | FSW = 0.0066
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.2963
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G28360 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0200
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT2G29390 | PredictedAffinity Capture-MS | FSW = 0.3414
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.1371
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G42160 | PredictedAffinity Capture-MS | FSW = 0.1752
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.1746
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.5226
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G03960 | Predictedinterologs mapping | FSW = 0.0338
| Unknown | CHAPERONIN PUTATIVE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.3505
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.4385
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT1G05650 | PredictedAffinity Capture-MS | FSW = 0.2494
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.4241
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.4170
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.3056
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G50030 | PredictedCo-purification | FSW = 0.0217
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0125
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.3259
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.4963
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.1378
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.2274
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G01090 | PredictedSynthetic Rescue | FSW = 0.0233
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G05540 | PredictedAffinity Capture-MS | FSW = 0.1642
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.5623
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.3834
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.3574
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.4068
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.4767
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G56440 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | ATATG18D |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.5183
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G18460 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0142
| Unknown | D-TYR-TRNA(TYR) DEACYLASE FAMILY PROTEIN |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1135
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G09390 | PredictedAffinity Capture-MS | FSW = 0.3051
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G10270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0337
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G13680 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0425
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.4560
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.1652
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G53000 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexCo-purificationAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.1011
| Unknown | TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G27000 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0107
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G27060 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0034
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.3637
| Unknown | ATATG18A |
AT4G08960 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0290
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT4G21800 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0376
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.4167
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.2911
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G33240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0107
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.4634
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.4226
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G10390 | Predictedinterologs mapping | FSW = 0.0198
| Unknown | HISTONE H3 |
AT5G10400 | Predictedinterologs mapping | FSW = 0.0176
| Unknown | HISTONE H3 |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.4075
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G23395 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST CONTAINS INTERPRO DOMAIN/S CHCH (INTERPROIPR010625) HAS 224 BLAST HITS TO 224 PROTEINS IN 106 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 109 FUNGI - 94 PLANTS - 20 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT5G35980 | Predictedinterologs mapping | FSW = 0.0096
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.4388
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G43010 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0221
| Unknown | RPT4A ATPASE |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.2428
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G57330 | PredictedAffinity Capture-MS | FSW = 0.0789
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT5G65860 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0121
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT4G30510 | Predictedinteraction prediction | FSW = 0.0213
| Unknown | ATATG18B |
AT2G39640 | Predictedinteraction prediction | FSW = 0.0114
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G50370 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2813
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT5G55260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0610
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454