Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G33040 - ( ATP synthase gamma chain mitochondrial (ATPC) )
28 Proteins interacs with AT2G33040| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G47030
   | Experimental | FSW = 0.0808
| Class A:mitochondrionClass B:unclearplastidnucleusClass D:mitochondrion (p = 0.82) | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL |
| AT5G14040
| Predictedtwo hybrid | FSW = 0.0703
| Class C:unclearplastidmitochondrion | MITOCHONDRIAL PHOSPHATE TRANSPORTER |
| AT2G26140
| PredictedSynthetic RescueSynthetic Rescueinteraction prediction | FSW = 0.1141
| Class C:unclear | FTSH4 (FTSH PROTEASE 4) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE |
| AT3G19980
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0123
| Class C:unclear | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT2G07698
| Predictedinteraction predictionEnriched domain pair | FSW = 0.1014
| Class C:plastidnucleusmitochondrion | ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE |
| AT5G08670
| PredictedSynthetic Rescueinteraction predictionEnriched domain pair | FSW = 0.1296
| Class C:plastidmitochondrion | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
| AT4G04640
| PredictedPhylogenetic profile method | FSW = 0.1875
| Class C:plastid | ATPC1 ENZYME REGULATOR |
| AT1G15700
| PredictedPhylogenetic profile method | FSW = 0.0994
| Class C:plastid | ATPC2 ENZYME REGULATOR |
| AT5G58230
| PredictedAffinity Capture-MS | FSW = 0.0082
| Class C:plastid | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
| AT1G17590
| PredictedAffinity Capture-MS | FSW = 0.0224
| Class C:nucleus | NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR |
| AT1G03190
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0052
| Class C:nucleus | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
| AT1G21690
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0166
| Class C:nucleus | EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT2G40290
| PredictedAffinity Capture-MS | FSW = 0.0039
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT2G34720
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0331
| Class C:nucleus | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
| AT3G15220
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0433
| Class C:nucleus | PROTEIN KINASE PUTATIVE |
| AT1G53165
| PredictedAffinity Capture-MS | FSW = 0.0321
| Class C:nucleus | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT5G56030
| PredictedAffinity Capture-MS | FSW = 0.0346
| Class C:mitochondrion | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
| AT3G48850
| Predictedtwo hybrid | FSW = 0.0645
| Class C:mitochondrion | MITOCHONDRIAL PHOSPHATE TRANSPORTER PUTATIVE |
| AT1G66580
| PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
| AT1G14320
| PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G52640
| PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT1G62020
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0262
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
| AT5G60790
| PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | ATGCN1 TRANSPORTER |
| AT5G12980
| Predictedtwo hybridtwo hybrid | FSW = 0.0345
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
| AT3G05090
| PredictedAffinity Capture-MS | FSW = 0.0536
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G27000
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0602
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT3G19420
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0126
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
| AT1G50370
| PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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