Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G21690 - ( emb1968 (embryo defective 1968) ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding )
28 Proteins interacs with AT1G21690| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G33040
   | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0166
| Class C:nucleus | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
| AT1G20960
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0065
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G08130
| PredictedAffinity Capture-Western | FSW = 0.2849
| Class C:nucleus | ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP) |
| AT3G06720
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0087
| Class C:nucleus | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
| AT4G38130
| PredictedAffinity Capture-MSin vivoCo-expression | FSW = 0.0310
| Class C:nucleus | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
| AT2G29570
| Predictedin vivoin vivoin vitroin vitroAffinity Capture-MSCo-expression | FSW = 0.2120
| Class C:nucleus | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
| AT1G07370
| PredictedSynthetic RescueReconstituted ComplexReconstituted Complexinteraction predictionCo-expression | FSW = 0.1293
| Class C:nucleus | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
| AT1G06230
| Predictedin vitro | FSW = 0.0919
| Class C:nucleus | GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING |
| AT1G23190
| PredictedAffinity Capture-MS | FSW = 0.0462
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
| AT1G18080
| PredictedGene fusion method | FSW = 0.0176
| Unknown | ATARCA NUCLEOTIDE BINDING |
| AT1G09830
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0662
| Unknown | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (PUR2) |
| AT5G51820
| PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
| AT1G70730
| Predictedinteraction prediction | FSW = 0.0693
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
| AT5G19330
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0194
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
| AT5G48970
| PredictedGene fusion method | FSW = 0.0246
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
| AT2G31970
| PredictedSynthetic LethalityCo-expression | FSW = 0.0561
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
| AT5G66130
| Predictedtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-MSAffinity Capture-MSReconstituted Complexin vivoCo-purificationCo-expression | FSW = 0.1986
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
| AT5G63960
| PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1179
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT5G22010
| Predictedtwo hybridSynthetic LethalityCo-purificationCo-purificationCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3575
| Unknown | ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G27740
| Predictedinteraction predictiontwo hybridtwo hybridSynthetic LethalitySynthetic LethalityReconstituted Complexin vivoin vivoin vitroin vitrointerologs mappingCo-purificationCo-purificationCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1704
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G77470
| Predictedtwo hybridtwo hybridReconstituted Complexin vivoin vitroCo-purificationCo-purificationCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2951
| Unknown | REPLICATION FACTOR C 36 KDA PUTATIVE |
| AT1G04730 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-Westernin vivoAffinity Capture-MSReconstituted ComplexCo-purificationinteraction predictionCo-expression | FSW = 0.1270
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
| AT1G08260
| PredictedSynthetic LethalityCo-expression | FSW = 0.0824
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT1G63160
| PredictedCo-purificationCo-purificationCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2129
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
| AT1G66740
| PredictedAffinity Capture-Western | FSW = 0.0751
| Unknown | SGA2 |
| AT5G13060
| PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING |
| AT1G02690
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0094
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
| AT2G27120
| Predictedinteraction prediction | FSW = 0.1815
| Unknown | TIL2 (TILTED 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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