Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G23190 - ( phosphoglucomutase cytoplasmic putative / glucose phosphomutase putative )
37 Proteins interacs with AT1G23190| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G48750
   | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0018
| Class A:plasma membranecytosolClass B:vacuoleplastidnucleusClass D:cytosol (p = 0.67) | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT5G15090
| PredictedAffinity Capture-MS | FSW = 0.0201
| Class C:vacuoleplastidplasma membrane | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
| AT5G63400
| Predictedtwo hybrid | FSW = 0.0188
| Class C:vacuole | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
| AT4G09720
| PredictedAffinity Capture-MS | FSW = 0.0354
| Class C:vacuole | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
| AT2G25110
| PredictedAffinity Capture-MS | FSW = 0.0234
| Class C:plastid | SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR) |
| AT5G51820
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1033
| Class C:plastid | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
| AT2G37080
| PredictedGene fusion method | FSW = 0.0333
| Class C:plastid | MYOSIN HEAVY CHAIN-RELATED |
| AT5G06290
| Predictedbiochemical | FSW = 0.0334
| Class C:plastid | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
| AT1G26160
| PredictedSynthetic Lethality | FSW = 0.0401
| Class C:plastid | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
| ATCG00500 | Predictedpull down | FSW = 0.0269
| Class C:plastid | ENCODES THE CARBOXYTRANSFERASE BETA SUBUNIT OF THE ACETYL-COA CARBOXYLASE (ACCASE) COMPLEX IN PLASTIDS THIS COMPLEX CATALYZES THE CARBOXYLATION OF ACETYL-COA TO PRODUCE MALONYL-COA THE FIRST COMMITTED STEP IN FATTY ACID SYNTHESIS |
| AT4G34460
| PredictedAffinity Capture-MS | FSW = 0.0198
| Class C:plasma membranecytosol | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G70730
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2822
| Class C:plasma membrane | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
| AT5G12350
| Predictedtwo hybrid | FSW = 0.0154
| Class C:plasma membrane | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
| AT1G07630
| PredictedAffinity Capture-MS | FSW = 0.0667
| Class C:plasma membrane | PLL5 CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT2G39480
| Predictedsynthetic growth defect | FSW = 0.0137
| Class C:plasma membrane | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G66410
| PredictedAffinity Capture-MS | FSW = 0.0021
| Class C:plasma membrane | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
| AT5G10080
| PredictedSynthetic Lethality | FSW = 0.1620
| Class C:plasma membrane | ASPARTYL PROTEASE FAMILY PROTEIN |
| AT3G16180
| PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridSynthetic LethalityAffinity Capture-MS | FSW = 0.0244
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
| AT2G17420
| Predictedtwo hybrid | FSW = 0.0283
| Unknown | NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE |
| AT1G21690
| PredictedAffinity Capture-MS | FSW = 0.0462
| Unknown | EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G40760
| Predictedblue native page | FSW = 0.0174
| Unknown | G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
| AT2G17510
| Predictedpull down | FSW = 0.0066
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
| AT1G18830 | Predictedsynthetic growth defect | FSW = 0.0108
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G22240
| PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
| AT2G03160
| PredictedSynthetic Lethalitytwo hybrid | FSW = 0.0324
| Unknown | ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G41340
| PredictedAffinity Capture-MS | FSW = 0.0274
| Unknown | RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT D) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G05420
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0160
| Unknown | IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE |
| AT2G31260
| Predictedsynthetic growth defect | FSW = 0.0253
| Unknown | APG9 (AUTOPHAGY 9) |
| AT4G00980
| PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
| AT5G24410
| PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
| AT5G54960
| PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | PDC2 (PYRUVATE DECARBOXYLASE-2) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING |
| AT5G16750
| PredictedAffinity Capture-MS | FSW = 0.0264
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
| AT4G03430
| PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT3G47120
| PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT2G16950
| PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
| AT1G16280
| PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G16980
| Predictedinterologs mapping | FSW = 0.0244
| Unknown | ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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