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AT5G15090 - ( VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) voltage-gated anion channel )

71 Proteins interacs with AT5G15090

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G01280	Predicted Synthetic Lethality	FSW = 0.0143	Class C: vacuole unclear plastid plasma membrane mitochondrion	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT5G67500	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.0236	Class C: vacuole unclear plastid mitochondrion	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT2G33120	Predicted Affinity Capture-MS	FSW = 0.0108	Class C: vacuole unclear plasma membrane	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT3G20000	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Synthetic Lethality	FSW = 0.0827	Class C: vacuole unclear mitochondrion	TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL
AT4G17730	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0240	Class C: vacuole unclear	SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR
AT5G02500	Predicted Affinity Capture-MS	FSW = 0.0100	Class C: vacuole plastid plasma membrane nucleus	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT1G23190	Predicted Affinity Capture-MS	FSW = 0.0201	Class C: vacuole plastid plasma membrane	PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE
AT3G08710	Predicted Synthetic Lethality	FSW = 0.0432	Class C: vacuole plasma membrane	ATH9 (THIOREDOXIN H-TYPE 9)
AT1G31780	Predicted Affinity Capture-MS	FSW = 0.0274	Class C: vacuole	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT4G29260	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1772	Class C: vacuole	ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT5G26030	Predicted Synthetic Lethality	FSW = 0.0203	Class C: unclear plastid mitochondrion	FC1 (FERROCHELATASE 1) FERROCHELATASE
AT5G57490	Predicted Gene fusion method Co-expression	FSW = 0.0764	Class C: unclear plasma membrane mitochondrion	VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4) VOLTAGE-GATED ANION CHANNEL
AT1G07790	Predicted Synthetic Lethality	FSW = 0.0079	Class C: plastid nucleus	HTB1 DNA BINDING
AT1G55920	Predicted Synthetic Lethality	FSW = 0.0377	Class C: plastid nucleus	ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT5G42130	Predicted Synthetic Lethality	FSW = 0.0267	Class C: plastid mitochondrion	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G51820	Predicted Synthetic Lethality	FSW = 0.0872	Class C: plastid	PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT5G62880	Predicted Affinity Capture-MS	FSW = 0.0589	Class C: plasma membrane nucleus	ARAC10 GTP BINDING
AT3G45780	Predicted two hybrid	FSW = 0.0324	Class C: plasma membrane	PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT1G20760	Predicted Synthetic Lethality	FSW = 0.0030	Class C: plasma membrane	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT5G25754	Predicted two hybrid two hybrid	FSW = 0.0145	Class C: plasma membrane	UNKNOWN PROTEIN
AT2G25070	Predicted Affinity Capture-MS	FSW = 0.0160	Class C: plasma membrane	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT5G45970	Predicted Affinity Capture-Western Affinity Capture-MS	FSW = 0.0070	Class C: plasma membrane	ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING
AT5G02490	Predicted Synthetic Lethality	FSW = 0.0185	Class C: plasma membrane	HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT4G21680	Predicted Affinity Capture-MS	FSW = 0.0404	Class C: plasma membrane	PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G43900	Predicted Synthetic Lethality	FSW = 0.0330	Class C: nucleus	MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT2G44860	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Synthetic Lethality Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Synthetic Lethality Co-purification co-fractionation Co-fractionation	FSW = 0.0617	Class C: nucleus	60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT2G44510	Predicted Synthetic Lethality	FSW = 0.0406	Class C: nucleus	P21CIP1-BINDING PROTEIN-RELATED
AT4G34430	Predicted Synthetic Lethality Affinity Capture-MS	FSW = 0.0369	Class C: nucleus	CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G03870	Predicted Affinity Capture-MS	FSW = 0.0112	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G41380	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0563	Class C: mitochondrion	EMBRYO-ABUNDANT PROTEIN-RELATED
AT2G20510	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.2404	Class C: mitochondrion	ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE
AT1G13560	Predicted two hybrid interaction prediction	FSW = 0.0209	Class C: mitochondrion	AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT5G66590	Predicted Synthetic Lethality	FSW = 0.0833	Unknown	ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G08730	Predicted Synthetic Lethality	FSW = 0.0021	Unknown	PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G18230	Predicted Synthetic Lethality	FSW = 0.0197	Unknown	ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT5G10330	Predicted Affinity Capture-MS	FSW = 0.0394	Unknown	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT3G13900	Predicted Affinity Capture-MS	FSW = 0.0122	Unknown	ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT1G71790	Predicted two hybrid two hybrid	FSW = 0.0074	Unknown	F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN
AT1G15440	Predicted Synthetic Lethality	FSW = 0.0403	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G22550	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0565	Unknown	PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G25500	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Synthetic Lethality Co-purification	FSW = 0.1379	Unknown	CHOLINE TRANSPORTER-RELATED
AT1G52500	Predicted Synthetic Lethality	FSW = 0.0656	Unknown	ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G60680	Predicted Synthetic Lethality	FSW = 0.0251	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G66810	Predicted Affinity Capture-MS	FSW = 0.0421	Unknown	ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT1G79820	Predicted Affinity Capture-MS	FSW = 0.0117	Unknown	SGB1 (SUPPRESSOR OF G PROTEIN BETA1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT2G31260	Predicted Synthetic Lethality	FSW = 0.1249	Unknown	APG9 (AUTOPHAGY 9)
AT2G39590	Predicted Synthetic Lethality	FSW = 0.0054	Unknown	40S RIBOSOMAL PROTEIN S15A (RPS15AC)
AT2G47090	Predicted Synthetic Lethality Affinity Capture-MS	FSW = 0.0679	Unknown	NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT2G48100	Predicted Synthetic Lethality	FSW = 0.0523	Unknown	EXONUCLEASE FAMILY PROTEIN
AT3G02000	Predicted Synthetic Lethality	FSW = 0.0258	Unknown	ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G08700	Predicted Synthetic Lethality	FSW = 0.0066	Unknown	UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT3G20650	Predicted Synthetic Lethality	FSW = 0.0022	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G47300	Predicted Affinity Capture-MS	FSW = 0.0383	Unknown	SELT (SELT-LIKE PROTEIN PRECURSOR) SELENIUM BINDING
AT3G57140	Predicted Synthetic Lethality	FSW = 0.0938	Unknown	PATATIN-RELATED
AT3G59540	Predicted Synthetic Lethality	FSW = 0.0736	Unknown	60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT3G62760	Predicted Synthetic Lethality	FSW = 0.0096	Unknown	ATGSTF13 GLUTATHIONE TRANSFERASE
AT4G18593	Predicted Synthetic Lethality	FSW = 0.0401	Unknown	DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED
AT5G01640	Predicted Affinity Capture-MS	FSW = 0.0551	Unknown	PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5)
AT5G01670	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Synthetic Lethality Co-purification	FSW = 0.0702	Unknown	ALDOSE REDUCTASE PUTATIVE
AT1G25510	Predicted Affinity Capture-MS	FSW = 0.0401	Unknown	ASPARTYL PROTEASE FAMILY PROTEIN
AT4G16370	Predicted Affinity Capture-MS	FSW = 0.0618	Unknown	ATOPT3 (OLIGOPEPTIDE TRANSPORTER) OLIGOPEPTIDE TRANSPORTER
AT4G19880	Predicted Affinity Capture-MS	FSW = 0.0322	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT4G29910	Predicted Affinity Capture-MS	FSW = 0.0072	Unknown	ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT5G05070	Predicted Synthetic Lethality	FSW = 0.0241	Unknown	ZINC ION BINDING
AT5G16040	Predicted Affinity Capture-Western Synthetic Lethality	FSW = 0.0115	Unknown	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G26250	Predicted Affinity Capture-MS	FSW = 0.0686	Unknown	SUGAR TRANSPORTER PUTATIVE
AT5G57480	Predicted synthetic growth defect Synthetic Lethality Reconstituted Complex Synthetic Lethality Affinity Capture-Western Synthetic Rescue synthetic growth defect	FSW = 0.0590	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT5G27970	Predicted Synthetic Lethality	FSW = 0.0042	Unknown	BINDING
AT5G55180	Predicted Affinity Capture-MS	FSW = 0.0401	Unknown	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G59040	Predicted Affinity Capture-MS	FSW = 0.0590	Unknown	COPT3 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT5G61010	Predicted Affinity Capture-MS	FSW = 0.0255	Unknown	ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G15090 - ( VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) voltage-gated anion channel )

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Fasta sequences:

Quick help

FSW

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