Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G44510 - ( p21Cip1-binding protein-related )
26 Proteins interacs with AT2G44510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0406
| Class C:nucleus | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT2G33370 | Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0405
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT3G44300 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-MSinterologs mappinginterologs mappingAffinity Capture-Western | FSW = 0.1747
| Unknown | NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0204
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G06290 | PredictedAffinity Capture-Western | FSW = 0.0445
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G26160 | PredictedAffinity Capture-Westerninterologs mappinginterologs mappingSynthetic LethalityAffinity Capture-MS | FSW = 0.1741
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT1G10900 | Predictedinterologs mapping | FSW = 0.0212
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT5G40370 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | GLUTAREDOXIN PUTATIVE |
AT5G24090 | PredictedColocalization | FSW = 0.0434
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT2G18230 | PredictedAffinity Capture-MS | FSW = 0.1286
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0038
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G51895 | PredictedAffinity Capture-MS | FSW = 0.0938
| Unknown | SULTR31 (SULFATE TRANSPORTER 31) SECONDARY ACTIVE SULFATE TRANSMEMBRANE TRANSPORTER/ SULFATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G01510 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0184
| Unknown | AN (ANGUSTIFOLIA) PROTEIN BINDING |
AT1G04480 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0430
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT1G11530 | Predictedtwo hybrid | FSW = 0.0154
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G22240 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G34180 | PredictedAffinity Capture-Westerntwo hybridtwo hybridtwo hybridinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridinterologs mapping | FSW = 0.1368
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G16740 | PredictedSynthetic Lethality | FSW = 0.0032
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G26695 | Predictedinterologs mapping | FSW = 0.1922
| Unknown | BINDING / ZINC ION BINDING |
AT3G09920 | Predictedinterologs mapping | FSW = 0.0221
| Unknown | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE |
AT3G47300 | PredictedColocalization | FSW = 0.1359
| Unknown | SELT (SELT-LIKE PROTEIN PRECURSOR) SELENIUM BINDING |
AT5G55180 | PredictedColocalization | FSW = 0.1420
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G25950 | PredictedPhenotypic Suppression | FSW = 0.0434
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G09480 | Predictedtwo hybrid | FSW = 0.0275
| Unknown | HISTONE H2B PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454