Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18230 - ( AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2) inorganic diphosphatase/ pyrophosphatase )
60 Proteins interacs with AT2G18230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0197
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT2G33210 | Predictedpull down | FSW = 0.0082
| Unknown | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT4G37910 | Predictedpull down | FSW = 0.0340
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0217
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G44300 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternSynthetic LethalityReconstituted ComplexAffinity Capture-WesternReconstituted ComplexSynthetic LethalityCo-purificationAffinity Capture-MS | FSW = 0.1322
| Unknown | NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT2G33800 | Predictedpull down | FSW = 0.1149
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT3G13120 | Predictedpull down | FSW = 0.0329
| Unknown | 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE |
AT1G69740 | PredictedAffinity Capture-MS | FSW = 0.0379
| Unknown | HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE |
AT5G14320 | PredictedAffinity Capture-MS | FSW = 0.0515
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT1G16880 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | URIDYLYLTRANSFERASE-RELATED |
AT3G44890 | Predictedpull down | FSW = 0.0274
| Unknown | RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G55220 | Predictedpull down | FSW = 0.1681
| Unknown | TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0277
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G53480 | PredictedSynthetic Lethality | FSW = 0.0199
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT1G24240 | Predictedpull down | FSW = 0.0229
| Unknown | RIBOSOMAL PROTEIN L19 FAMILY PROTEIN |
AT1G78630 | Predictedpull down | FSW = 0.0816
| Unknown | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G33450 | Predictedpull down | FSW = 0.0281
| Unknown | 50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28) |
AT2G43030 | Predictedpull down | FSW = 0.0375
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT1G26160 | PredictedAffinity Capture-Westerninterologs mappingSynthetic Lethality | FSW = 0.1076
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
ATCG00160 | Predictedpull down | FSW = 0.0466
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
ATCG00330 | Predictedpull down | FSW = 0.0188
| Unknown | 30S CHLOROPLAST RIBOSOMAL PROTEIN S14 |
ATCG00770 | Predictedpull down | FSW = 0.0352
| Unknown | CHLOROPLAST 30S RIBOSOMAL PROTEIN S8 |
ATCG00780 | Predictedpull down | FSW = 0.0689
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L14 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00800 | Predictedpull down | FSW = 0.0437
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00810 | Predictedpull down | FSW = 0.0108
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG01240 | Predictedpull down | FSW = 0.0464
| Unknown | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
AT1G73230 | PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT1G75840 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G02500 | Predictedtwo hybridReconstituted ComplexAffinity Capture-WesternSynthetic Lethality | FSW = 0.0926
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT2G25070 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT2G44510 | PredictedAffinity Capture-MS | FSW = 0.1286
| Unknown | P21CIP1-BINDING PROTEIN-RELATED |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT1G55520 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT4G02930 | Predictedpull down | FSW = 0.0256
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT2G20060 | Predictedpull down | FSW = 0.1415
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT4G35970 | Predictedpull down | FSW = 0.0164
| Unknown | APX5 (ASCORBATE PEROXIDASE 5) L-ASCORBATE PEROXIDASE/ HEME BINDING / PEROXIDASE |
AT5G07470 | Predictedpull down | FSW = 0.0157
| Unknown | PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PEPTIDE-METHIONINE-(S)-S-OXIDE REDUCTASE |
AT5G48440 | Predictedpull down | FSW = 0.0166
| Unknown | OXIDOREDUCTASE |
AT5G63120 | Predictedpull down | FSW = 0.0930
| Unknown | ETHYLENE-RESPONSIVE DEAD BOX RNA HELICASE PUTATIVE (RH30) |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT1G12130 | PredictedSynthetic Lethality | FSW = 0.0058
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT2G26695 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted Complex | FSW = 0.0741
| Unknown | BINDING / ZINC ION BINDING |
AT2G34180 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.0840
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G24840 | PredictedSynthetic Lethality | FSW = 0.0126
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT2G32415 | Predictedtwo hybrid | FSW = 0.0152
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G42650 | Predictedtwo hybrid | FSW = 0.0312
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G03773 | Predictedtwo hybrid | FSW = 0.0330
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S CS DOMAIN (INTERPROIPR007052) HSP20-LIKE CHAPERONE (INTERPROIPR008978) CS (INTERPROIPR017447) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS GLYCINE-RICH PROTEIN (TAIRAT4G024502) HAS 482 BLAST HITS TO 482 PROTEINS IN 157 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 241 FUNGI - 87 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT3G27060 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT3G54085 | PredictedReconstituted Complex | FSW = 0.2088
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM CONTAINS INTERPRO DOMAIN/S YOS1-LIKE (INTERPROIPR013880) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G379751) HAS 139 BLAST HITS TO 139 PROTEINS IN 61 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 86 FUNGI - 16 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 11 (SOURCE NCBI BLINK) |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | ATATG18A |
AT4G10480 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT4G30820 | Predictedtwo hybrid | FSW = 0.0091
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G01640 | PredictedAffinity Capture-MS | FSW = 0.0488
| Unknown | PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5) |
AT5G06130 | Predictedtwo hybrid | FSW = 0.0172
| Unknown | CHAPERONE PROTEIN DNAJ-RELATED |
AT5G37830 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
AT5G55190 | PredictedReconstituted Complex | FSW = 0.0352
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454