Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G03690 - ( coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein )
28 Proteins interacs with AT2G03690Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0116
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT5G06290 | Predictedbiochemical | FSW = 0.0303
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT5G63980 | PredictedAffinity Capture-MS | FSW = 0.1047
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT1G02500 | PredictedAffinity Capture-MS | FSW = 0.0431
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT1G02780 | PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G63680 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G40370 | PredictedAffinity Capture-MS | FSW = 0.0404
| Unknown | GLUTAREDOXIN PUTATIVE |
AT4G14340 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G79020 | PredictedAffinity Capture-Western | FSW = 0.0571
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT5G27720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0419
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT5G02730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0888
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G45280 | PredictedAffinity Capture-MS | FSW = 0.0206
| Unknown | SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER |
AT2G30920 | Predictedco-fractionationCo-fractionationAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0345
| Unknown | ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3) HEXAPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE/ POLYPRENYLDIHYDROXYBENZOATE METHYLTRANSFERASE |
AT2G18230 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G25500 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | CHOLINE TRANSPORTER-RELATED |
AT1G25510 | PredictedAffinity Capture-MS | FSW = 0.0441
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G47830 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G27580 | PredictedAffinity Capture-MS | FSW = 0.0774
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G45190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0718
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT5G44740 | Predictedbiochemical | FSW = 0.0197
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT2G39590 | PredictedAffinity Capture-Western | FSW = 0.0462
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT5G24840 | PredictedAffinity Capture-Western | FSW = 0.0163
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454