Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G39590 - ( 40S ribosomal protein S15A (RPS15aC) )
37 Proteins interacs with AT2G39590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0054
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT1G72730 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0061
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT1G07770 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0275
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G07100 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G11070 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | OUTER MEMBRANE OMP85 FAMILY PROTEIN |
AT5G61520 | PredictedAffinity Capture-MS | FSW = 0.0847
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT5G25400 | PredictedAffinity Capture-MS | FSW = 0.0597
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT3G18790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0506
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT3G17390 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.0246
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT5G19990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0369
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT3G14980 | PredictedCo-purification | FSW = 0.0439
| Unknown | PHD FINGER TRANSCRIPTION FACTOR PUTATIVE |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT3G49920 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT4G29430 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1117
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.1096
| Unknown | UNKNOWN PROTEIN |
AT1G47830 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G53270 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT1G54560 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.0584
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT2G03690 | PredictedAffinity Capture-Western | FSW = 0.0462
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G14560 | PredictedAffinity Capture-MS | FSW = 0.0585
| Unknown | LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G38600 | PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT2G40570 | PredictedReconstituted Complex | FSW = 0.0516
| Unknown | INITIATOR TRNA PHOSPHORIBOSYL TRANSFERASE FAMILY PROTEIN |
AT3G21215 | PredictedAffinity Capture-MS | FSW = 0.0504
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT4G04885 | PredictedAffinity Capture-MS | FSW = 0.0423
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT5G14060 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G45990 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G66640 | Predictedbiochemical | FSW = 0.0043
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT2G19720 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2178
| Unknown | RPS15AB (RIBOSOMAL PROTEIN S15A B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G46040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2727
| Unknown | RPS15AD (RIBOSOMAL PROTEIN S15A D) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G59850 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0751
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454