Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G19720 - ( rps15ab (ribosomal protein S15A B) structural constituent of ribosome )
12 Proteins interacs with AT2G19720| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G07770
   | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0637
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0131
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT1G59830
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0703
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT4G29430
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1994
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G12340
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1355
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
| AT3G58830
| Predictedsynthetic growth defect | FSW = 0.0410
| Unknown | HALOACID DEHALOGENASE (HAD) SUPERFAMILY PROTEIN |
| AT4G04210
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0972
| Unknown | PUX4 PROTEIN BINDING |
| AT4G10360
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1292
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
| AT5G67290
| Predictedsynthetic growth defect | FSW = 0.1250
| Unknown | FAD-DEPENDENT OXIDOREDUCTASE FAMILY PROTEIN |
| AT5G59850 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1330
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
| AT3G46040
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.6316
| Unknown | RPS15AD (RIBOSOMAL PROTEIN S15A D) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G39590
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2178
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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