Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G10360 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN integral to membrane EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s TRAM LAG1 and CLN8 homology (InterProIPR006634) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G313002) Has 453 Blast hits to 451 proteins in 101 species Archae - 0 Bacteria - 0 Metazoa - 225 Fungi - 97 Plants - 91 Viruses - 3 Other Eukaryotes - 37 (source NCBI BLink) )
37 Proteins interacs with AT4G10360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedPhenotypic Suppression | FSW = 0.0549
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G09590 | PredictedPhenotypic Suppression | FSW = 0.1034
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0278
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350 | PredictedPhenotypic Enhancement | FSW = 0.0363
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G07090 | PredictedPhenotypic Enhancement | FSW = 0.0883
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT1G55920 | PredictedPhenotypic Suppression | FSW = 0.0530
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT3G19170 | PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
AT3G14930 | PredictedPhenotypic Enhancement | FSW = 0.0952
| Unknown | HEME1 UROPORPHYRINOGEN DECARBOXYLASE |
AT2G41680 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0667
| Unknown | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C) THIOREDOXIN-DISULFIDE REDUCTASE |
AT1G10070 | PredictedPhenotypic Enhancement | FSW = 0.0235
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT4G34230 | Predictedco-fractionationCo-fractionation | FSW = 0.0399
| Unknown | ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) CINNAMYL-ALCOHOL DEHYDROGENASE |
AT4G25340 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.0914
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT3G49920 | PredictedPhenotypic Enhancement | FSW = 0.1013
| Unknown | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT2G19980 | PredictedPhenotypic Suppression | FSW = 0.0617
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G10920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0261
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.0982
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G12340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0779
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT1G21170 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | SEC5B |
AT1G52500 | PredictedPhenotypic Suppression | FSW = 0.0617
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G64170 | PredictedPhenotypic Enhancement | FSW = 0.0952
| Unknown | ATCHX16 (CATION/H+ EXCHANGER 16) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT3G62240 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT4G04210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0696
| Unknown | PUX4 PROTEIN BINDING |
AT1G31170 | PredictedPhenotypic Enhancement | FSW = 0.0786
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT2G19720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1292
| Unknown | RPS15AB (RIBOSOMAL PROTEIN S15A B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G11240 | PredictedPhenotypic Enhancement | FSW = 0.0545
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G50780 | PredictedPhenotypic Suppression | FSW = 0.0784
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT4G15930 | PredictedPhenotypic Enhancement | FSW = 0.0054
| Unknown | MICROTUBULE MOTOR |
AT4G16360 | PredictedPhenotypic Enhancement | FSW = 0.0447
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT4G19645 | PredictedPhenotypic SuppressionGene neighbors methodPhylogenetic profile method | FSW = 0.0758
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.1252
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.1074
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0078
| Unknown | BINDING |
AT5G45620 | PredictedPhenotypic Enhancement | FSW = 0.0376
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT4G21480 | PredictedPhenotypic Enhancement | FSW = 0.0671
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.0584
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.1530
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454