Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G10360 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN integral to membrane EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s TRAM LAG1 and CLN8 homology (InterProIPR006634) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G313002) Has 453 Blast hits to 451 proteins in 101 species Archae - 0 Bacteria - 0 Metazoa - 225 Fungi - 97 Plants - 91 Viruses - 3 Other Eukaryotes - 37 (source NCBI BLink) )

37 Proteins interacs with AT4G10360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09630

Predicted

Phenotypic Suppression

FSW = 0.0549

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT5G09590

Predicted

Phenotypic Suppression

FSW = 0.1034

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT3G62870

Predicted

Synthetic Lethality

FSW = 0.0278

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G10350

Predicted

Phenotypic Enhancement

FSW = 0.0363

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT5G07090

Predicted

Phenotypic Enhancement

FSW = 0.0883

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4B)
AT1G55920

Predicted

Phenotypic Suppression

FSW = 0.0530

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT3G19170

Predicted

Affinity Capture-MS

FSW = 0.0338

Unknown

ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE
AT3G14930

Predicted

Phenotypic Enhancement

FSW = 0.0952

Unknown

HEME1 UROPORPHYRINOGEN DECARBOXYLASE
AT2G41680

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0667

Unknown

NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C) THIOREDOXIN-DISULFIDE REDUCTASE
AT1G10070

Predicted

Phenotypic Enhancement

FSW = 0.0235

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT4G34230

Predicted

co-fractionation

Co-fractionation

FSW = 0.0399

Unknown

ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) CINNAMYL-ALCOHOL DEHYDROGENASE
AT4G25340

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0914

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT2G47510

Predicted

Affinity Capture-MS

FSW = 0.0363

Unknown

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT3G49920

Predicted

Phenotypic Enhancement

FSW = 0.1013

Unknown

VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL
AT2G19980

Predicted

Phenotypic Suppression

FSW = 0.0617

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G10920

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0261

Unknown

KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT4G17190

Predicted

Phenotypic Enhancement

FSW = 0.0982

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G12340

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0779

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK)
AT1G21170Predicted

Affinity Capture-MS

FSW = 0.0125

Unknown

SEC5B
AT1G52500

Predicted

Phenotypic Suppression

FSW = 0.0617

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G64170

Predicted

Phenotypic Enhancement

FSW = 0.0952

Unknown

ATCHX16 (CATION/H+ EXCHANGER 16) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER
AT3G62240

Predicted

Affinity Capture-MS

FSW = 0.0400

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT4G04210

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0696

Unknown

PUX4 PROTEIN BINDING
AT1G31170

Predicted

Phenotypic Enhancement

FSW = 0.0786

Unknown

SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT2G19720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1292

Unknown

RPS15AB (RIBOSOMAL PROTEIN S15A B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G11240

Predicted

Phenotypic Enhancement

FSW = 0.0545

Unknown

ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE
AT3G50780

Predicted

Phenotypic Suppression

FSW = 0.0784

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)
AT4G15930

Predicted

Phenotypic Enhancement

FSW = 0.0054

Unknown

MICROTUBULE MOTOR
AT4G16360

Predicted

Phenotypic Enhancement

FSW = 0.0447

Unknown

AMP-ACTIVATED PROTEIN KINASE
AT4G19645

Predicted

Phenotypic Suppression

Gene neighbors method

Phylogenetic profile method

FSW = 0.0758

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT5G01430

Predicted

Phenotypic Enhancement

FSW = 0.1252

Unknown

GOT1-LIKE FAMILY PROTEIN
AT5G04800

Predicted

Phenotypic Enhancement

FSW = 0.1074

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.0078

Unknown

BINDING
AT5G45620

Predicted

Phenotypic Enhancement

FSW = 0.0376

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT4G21480

Predicted

Phenotypic Enhancement

FSW = 0.0671

Unknown

CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G49970

Predicted

Phenotypic Enhancement

FSW = 0.0584

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G64760

Predicted

Phenotypic Enhancement

FSW = 0.1530

Unknown

RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454