Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G34230 - ( ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) cinnamyl-alcohol dehydrogenase )
18 Proteins interacs with AT4G34230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G05440 | Experimental | FSW = 0.1905
| Class A:extracellularClass B:plasma membranecytosol | GLYCINE-RICH PROTEIN |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.0287
| Class C:plasma membrane | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT3G13080 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT3G62870 | Predictedsynthetic growth defecttwo hybrid | FSW = 0.0101
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G09570 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT3G05960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0304
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G04885 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT1G66240 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT4G10360 | Predictedco-fractionationCo-fractionation | FSW = 0.0399
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
AT4G37980 | PredictedShared biological functionGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5786
| Unknown | ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT1G72680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2225
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT3G19450 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.4629
| Unknown | ATCAD4 CINNAMYL-ALCOHOL DEHYDROGENASE |
AT4G37990 | PredictedShared biological functionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5260
| Unknown | ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) ARYL-ALCOHOL DEHYDROGENASE/ MANNITOL DEHYDROGENASE |
AT4G37970 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6090
| Unknown | CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT4G39330 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1014
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT2G21890 | PredictedPhylogenetic profile method | FSW = 0.3537
| Unknown | CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT2G21730 | PredictedPhylogenetic profile method | FSW = 0.4286
| Unknown | CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454