Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G12350 - ( Ran GTPase binding / chromatin binding / zinc ion binding )
53 Proteins interacs with AT5G12350Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G23190 | Predictedtwo hybrid | FSW = 0.0154
| Class C:plasma membrane | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0145
| Class C:plasma membrane | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G08710 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0552
| Class C:plasma membrane | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.0952
| Class C:plasma membrane | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G08530 | PredictedAffinity Capture-MS | FSW = 0.0282
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.1139
| Class C:plasma membrane | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G13560 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0993
| Class C:plasma membrane | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G34230 | PredictedAffinity Capture-MS | FSW = 0.0287
| Class C:plasma membrane | ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) CINNAMYL-ALCOHOL DEHYDROGENASE |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.0392
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0078
| Class C:plasma membrane | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.1471
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G13320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1214
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G29900 | PredictedGene fusion method | FSW = 0.0124
| Class C:plasma membrane | ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.0917
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.1044
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.0407
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0643
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0297
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G20160 | PredictedAffinity Capture-MS | FSW = 0.0652
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G18620 | PredictedGene fusion method | FSW = 0.0053
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT3G20970 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1105
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0665
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT4G33730 | Predictedbiochemical | FSW = 0.0070
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.1219
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.0827
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT1G01140 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G33040 | PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G33770 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G51770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1240
| Unknown | UNKNOWN PROTEIN |
AT1G59730 | PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.0429
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.1538
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G67300 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
AT1G80510 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G16710 | PredictedAffinity Capture-MS | FSW = 0.0409
| Unknown | HESB-LIKE DOMAIN-CONTAINING PROTEIN |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.0446
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G52560 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G60240 | PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G09150 | PredictedAffinity Capture-MS | FSW = 0.0451
| Unknown | T-COMPLEX PROTEIN 11 |
AT4G22753 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ CATALYTIC |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT5G02560 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0656
| Unknown | HTA12 DNA BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.0480
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G09630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1201
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.1008
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT3G57140 | Predictedbiochemical | FSW = 0.0140
| Unknown | PATATIN-RELATED |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.1195
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G59040 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | COPT3 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G47660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0345
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT1G69710 | PredictedPhylogenetic profile method | FSW = 0.0367
| Unknown | ZINC FINGER PROTEIN PUTATIVE / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT4G32640 | PredictedGene fusion method | FSW = 0.0193
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454