Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G59730 - ( ATH7 (thioredoxin H-type 7) )
31 Proteins interacs with AT1G59730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G16660 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.1823
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G18140 | PredictedPhenotypic Suppression | FSW = 0.0413
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.1877
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.1512
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.1255
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G65240 | PredictedAffinity Capture-MS | FSW = 0.1323
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT3G54660 | Predictedinterologs mapping | FSW = 0.0355
| Unknown | GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE |
AT1G15170 | Predictedtwo hybrid | FSW = 0.0643
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G45145 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0356
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.1325
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | ARAC10 GTP BINDING |
AT3G19960 | PredictedAffinity Capture-Western | FSW = 0.0571
| Unknown | ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) MOTOR |
AT4G35020 | PredictedPhenotypic Suppression | FSW = 0.0225
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT5G39950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1422
| Unknown | ATTRX2 (THIOREDOXIN 2) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT3G55605 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.1544
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.1444
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.2016
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G51030 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1778
| Unknown | ATTRX1 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G07340 | PredictedAffinity Capture-Western | FSW = 0.0096
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.2107
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0361
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.1808
| Unknown | UNKNOWN PROTEIN |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.1185
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.1794
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.0610
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.2344
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT1G11530 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2128
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454