Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G65240 - ( aspartyl protease family protein )
30 Proteins interacs with AT1G65240Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20260 | PredictedCo-purification | FSW = 0.0242
| Class C:plastid | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G11870 | PredictedAffinity Capture-MS | FSW = 0.0095
| Class C:plastid | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.0391
| Class C:plastid | PROTEIN KINASE FAMILY PROTEIN |
AT4G36750 | PredictedReconstituted Complex | FSW = 0.1421
| Class C:plasma membrane | QUINONE REDUCTASE FAMILY PROTEIN |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0883
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G02740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0392
| Class C:plasma membrane | ASPARTYL PROTEASE FAMILY PROTEIN |
AT2G43810 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT3G13445 | Predictedco-fractionationCo-fractionation | FSW = 0.0746
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT2G17130 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0460
| Unknown | IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.1743
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G33730 | Predictedinterologs mapping | FSW = 0.0844
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G43460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternReconstituted ComplexCo-crystal Structure | FSW = 0.1841
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT1G08260 | Predictedco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationinterologs mapping | FSW = 0.1522
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.1145
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0525
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.1846
| Unknown | UNKNOWN PROTEIN |
AT1G59730 | PredictedAffinity Capture-MS | FSW = 0.1323
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
AT1G59580 | PredictedSynthetic Lethality | FSW = 0.0199
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT3G17520 | PredictedReconstituted Complex | FSW = 0.1394
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
AT4G02120 | PredictedSynthetic Lethality | FSW = 0.0460
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT5G11570 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.2344
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.0938
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.0576
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.1534
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.1072
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.1356
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT5G06600 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G19660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1540
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G57330 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1323
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454