Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G17620 - ( CYCB21 (Cyclin B21) cyclin-dependent protein kinase regulator )
61 Proteins interacs with AT2G17620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G76540 | Experimentalpull downReconstituted Complex | FSW = 0.0142
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT3G54180 | Experimentalprotein complementation assay | FSW = 0.0123
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.1247
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0537
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.2394
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.2784
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G65240 | PredictedAffinity Capture-MS | FSW = 0.0938
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G16950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2385
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G25400 | PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.1134
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT3G18790 | PredictedAffinity Capture-MS | FSW = 0.0451
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.2153
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0567
| Unknown | ARAC10 GTP BINDING |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.3138
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.0850
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT3G13560 | PredictedAffinity Capture-MS | FSW = 0.1171
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.2662
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G24400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2370
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G70490 | PredictedAffinity Capture-MS | FSW = 0.1179
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3440
| Unknown | ZINC ION BINDING |
AT2G37790 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.1069
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.3139
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.2884
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1958
| Unknown | HISTONE H2B PUTATIVE |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.2419
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.2409
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0809
| Unknown | ATPRB1 |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.2501
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.1886
| Unknown | UNKNOWN PROTEIN |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.1601
| Unknown | UNKNOWN PROTEIN |
AT1G63660 | PredictedAffinity Capture-MS | FSW = 0.1925
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G79210 | PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.3123
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.3252
| Unknown | UNKNOWN PROTEIN |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.3352
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.3918
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2911
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.2793
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G11900 | PredictedAffinity Capture-MS | FSW = 0.2061
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.2574
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3255
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2870
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G53510 | PredictedAffinity Capture-MS | FSW = 0.2439
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0837
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G16040 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0253
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G42160 | PredictedAffinity Capture-MS | FSW = 0.1842
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.2695
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.3522
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.2335
| Unknown | HISTONE H4 |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.3763
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.1700
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.1094
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2449
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.2323
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G20610 | PredictedEnriched domain pairGene fusion method | FSW = 0.0107
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454