Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G20650 - ( mRNA capping enzyme family protein )
95 Proteins interacs with AT3G20650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0022
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.4291
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.3137
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.4055
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G28710 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0460
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.2071
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.4537
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT5G64960 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | CDKC2 (CYCLIN DEPENDENT KINASE GROUP C 2) KINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.3834
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.4915
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.4320
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT1G74710 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.2015
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2461
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.4585
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT4G35800 | PredictedReconstituted ComplexAffinity Capture-Westerninteraction prediction | FSW = 0.0243
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.3524
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.4202
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.4223
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G02500 | Predictedinterologs mapping | FSW = 0.0142
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.5389
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G17390 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0142
| Unknown | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2155
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.4436
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.4093
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.3130
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G70490 | PredictedAffinity Capture-MS | FSW = 0.1175
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.4743
| Unknown | ZINC ION BINDING |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.4192
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.0847
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.4090
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0763
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.4534
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT1G63210 | PredictedAffinity Capture-MS | FSW = 0.0656
| Unknown | RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT1G65440 | PredictedAffinity Capture-MS | FSW = 0.0366
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.4201
| Unknown | HISTONE H2B PUTATIVE |
AT4G08350 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0306
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0363
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.2070
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.4807
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.3272
| Unknown | BINDING |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.1624
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.1086
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.3039
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.4211
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.3855
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.4731
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.0393
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT4G21710 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0415
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.3819
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT2G01650 | Predictedtwo hybridtwo hybrid | FSW = 0.0327
| Unknown | PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.3676
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.2015
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5342
| Unknown | UNKNOWN PROTEIN |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.3098
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.4872
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.5203
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.4254
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G17620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3255
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.4025
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.5283
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.3659
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.5006
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.4527
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.3947
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G22290 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | 14-3-3 PROTEIN GF14 PUTATIVE (GRF10) |
AT1G30580 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | GTP BINDING |
AT1G63660 | PredictedAffinity Capture-MS | FSW = 0.1346
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.4444
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT1G78970 | PredictedAffinity Capture-MS | FSW = 0.1421
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.0939
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.3167
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0343
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0033
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G45740 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | HYDROLASE FAMILY PROTEIN / HAD-SUPERFAMILY PROTEIN |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.2309
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.1975
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G15770 | PredictedSynthetic Lethality | FSW = 0.0078
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.1352
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G26810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2090
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0873
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2501
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0573
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.1400
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G63670 | PredictedAffinity Capture-MS | FSW = 0.0406
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.4291
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.3152
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.4213
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.4657
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.3815
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.4020
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.3486
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G08565 | PredictedAffinity Capture-MS | FSW = 0.0483
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454