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AT5G23740 - ( RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) structural constituent of ribosome )

82 Proteins interacs with AT5G23740

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G01410	Predicted Synthetic Lethality	FSW = 0.0038	Class C: plasma membrane nucleus cytosol	RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.3960	Class C: plasma membrane nucleus cytosol	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G27970	Predicted Affinity Capture-MS	FSW = 0.4844	Class C: plasma membrane nucleus	NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT3G48930	Predicted Phylogenetic profile method Co-expression	FSW = 0.0214	Class C: plasma membrane nucleus	EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G01250	Predicted Affinity Capture-MS	FSW = 0.0932	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.4502	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT3G56190	Predicted Affinity Capture-MS	FSW = 0.3960	Class C: plasma membrane	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G22780	Predicted Affinity Capture-MS	FSW = 0.5237	Class C: plasma membrane	PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G62150	Predicted Affinity Capture-MS	FSW = 0.2427	Class C: plasma membrane	PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G15210	Predicted Affinity Capture-MS	FSW = 0.5924	Class C: plasma membrane	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.3669	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT5G43370	Predicted Affinity Capture-MS	FSW = 0.5764	Class C: plasma membrane	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G36860	Predicted Affinity Capture-MS	FSW = 0.5446	Class C: plasma membrane	ZINC ION BINDING
AT1G09640	Predicted Affinity Capture-MS	FSW = 0.4853	Class C: plasma membrane	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT1G07930	Predicted Affinity Capture-MS	FSW = 0.5944	Class C: nucleus	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G20020	Predicted two hybrid	FSW = 0.0385	Class C: nucleus	RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G16950	Predicted Affinity Capture-MS	FSW = 0.4730	Class C: nucleus	LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT5G67630	Predicted Affinity Capture-MS	FSW = 0.0052	Class C: nucleus	DNA HELICASE PUTATIVE
AT4G19610	Predicted two hybrid	FSW = 0.0194	Class C: nucleus	RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G44500	Predicted Affinity Capture-MS	FSW = 0.4730	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT5G59870	Predicted Affinity Capture-MS	FSW = 0.5863	Class C: nucleus	HTA6 DNA BINDING
AT2G40290	Predicted Affinity Capture-MS	FSW = 0.0201	Class C: nucleus	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT2G37470	Predicted Affinity Capture-MS	FSW = 0.3966	Class C: nucleus	HISTONE H2B PUTATIVE
AT4G32470	Predicted Affinity Capture-MS	FSW = 0.6157	Unknown	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT5G24780	Predicted Affinity Capture-MS	FSW = 0.1028	Unknown	VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING
AT3G62870	Predicted Synthetic Lethality	FSW = 0.0262	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G29080	Predicted two hybrid	FSW = 0.0070	Unknown	FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE
AT2G19860	Predicted Affinity Capture-MS	FSW = 0.4952	Unknown	HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G08950	Predicted Affinity Capture-MS	FSW = 0.5350	Unknown	ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT3G19980	Predicted Affinity Capture-MS	FSW = 0.4399	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G44610	Predicted Affinity Capture-MS	FSW = 0.1950	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT3G11630	Predicted Affinity Capture-MS	FSW = 0.3113	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT3G06040	Predicted Affinity Capture-MS	FSW = 0.5309	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT3G61200	Predicted two hybrid	FSW = 0.0381	Unknown	THIOESTERASE FAMILY PROTEIN
AT3G10920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1390	Unknown	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT3G52580	Predicted Affinity Capture-MS	FSW = 0.5389	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT5G41480	Predicted Affinity Capture-MS	FSW = 0.4882	Unknown	GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G10610	Predicted Affinity Capture-MS	FSW = 0.0190	Unknown	40S RIBOSOMAL PROTEIN S17 (RPS17C)
AT4G30800	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.0317	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT3G12530	Predicted Affinity Capture-MS	FSW = 0.4065	Unknown	PSF2
AT5G47880	Predicted Affinity Capture-MS	FSW = 0.5394	Unknown	ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT2G24040	Predicted Affinity Capture-MS	FSW = 0.6212	Unknown	HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT3G01160	Predicted two hybrid	FSW = 0.0183	Unknown	UNKNOWN PROTEIN
AT4G20325	Predicted two hybrid	FSW = 0.0105	Unknown	UNKNOWN PROTEIN
AT5G46540	Predicted two hybrid	FSW = 0.0272	Unknown	PGP7 (P-GLYCOPROTEIN 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G47480	Predicted two hybrid	FSW = 0.0118	Unknown	UNKNOWN PROTEIN
AT1G34770	Predicted Affinity Capture-MS	FSW = 0.0160	Unknown	MAGE-8 ANTIGEN-RELATED
AT4G34910	Predicted Affinity Capture-MS	FSW = 0.0167	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G54940	Predicted Affinity Capture-MS	FSW = 0.0061	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT1G24706	Predicted Affinity Capture-MS	FSW = 0.2409	Unknown	UNKNOWN PROTEIN
AT1G26480	Predicted Affinity Capture-MS	FSW = 0.1355	Unknown	GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G33110	Predicted Affinity Capture-MS	FSW = 0.5760	Unknown	MATE EFFLUX FAMILY PROTEIN
AT1G51770	Predicted Affinity Capture-MS	FSW = 0.5965	Unknown	UNKNOWN PROTEIN
AT1G62880	Predicted Affinity Capture-MS	FSW = 0.5731	Unknown	CORNICHON FAMILY PROTEIN
AT1G64480	Predicted Affinity Capture-MS	FSW = 0.5694	Unknown	CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G71280	Predicted Affinity Capture-MS	FSW = 0.5404	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G19910	Predicted Affinity Capture-MS	FSW = 0.2033	Unknown	RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G29390	Predicted Affinity Capture-MS	FSW = 0.4871	Unknown	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT2G43360	Predicted Affinity Capture-MS	FSW = 0.2176	Unknown	BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT2G46860	Predicted Affinity Capture-MS	FSW = 0.5414	Unknown	ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G19940	Predicted Affinity Capture-MS	FSW = 0.4488	Unknown	SUGAR TRANSPORTER PUTATIVE
AT4G17770	Predicted Affinity Capture-MS	FSW = 0.5597	Unknown	ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G25860	Predicted Affinity Capture-MS	FSW = 0.4866	Unknown	ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING
AT4G26230	Predicted Affinity Capture-MS	FSW = 0.3236	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G39330	Predicted Affinity Capture-MS	FSW = 0.4616	Unknown	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G09630	Predicted Affinity Capture-MS	FSW = 0.4983	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.3772	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT1G11530	Predicted Affinity Capture-MS	FSW = 0.4974	Unknown	ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G20696	Predicted Affinity Capture-MS	FSW = 0.5103	Unknown	HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G55730	Predicted Affinity Capture-MS	FSW = 0.3006	Unknown	ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G76720	Predicted Affinity Capture-MS	FSW = 0.5755	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT2G29190	Predicted Synthetic Lethality	FSW = 0.0032	Unknown	APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT3G12690	Predicted Affinity Capture-MS	FSW = 0.5753	Unknown	AGC15 (AGC KINASE 15) KINASE
AT3G20650	Predicted Affinity Capture-MS	FSW = 0.4223	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G23570	Predicted Affinity Capture-MS	FSW = 0.4038	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G30842	Predicted Affinity Capture-MS	FSW = 0.4491	Unknown	PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G45590	Predicted Affinity Capture-MS	FSW = 0.0641	Unknown	ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE
AT3G52390	Predicted Affinity Capture-MS	FSW = 0.4622	Unknown	TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53510	Predicted Affinity Capture-MS	FSW = 0.3404	Unknown	ABC TRANSPORTER FAMILY PROTEIN
AT4G04700	Predicted Affinity Capture-MS	FSW = 0.0181	Unknown	CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G09390	Predicted Affinity Capture-MS	FSW = 0.3890	Unknown	CD2-BINDING PROTEIN-RELATED
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.4474	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT5G23740 - ( RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) structural constituent of ribosome )

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