Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G24780 - ( VSP1 (VEGETATIVE STORAGE PROTEIN 1) acid phosphatase/ transcription factor binding )
46 Proteins interacs with AT5G24780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G18960 | ExperimentalCo-purification | FSW = 0.0099
| Class B:vacuolenucleus | AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0120
| Class C:vacuole | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.2398
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5525
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.3832
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0264
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.3952
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.1028
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.2715
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4509
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.2301
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT2G47160 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4098
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G70490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3926
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G02870 | PredictedAffinity Capture-MS | FSW = 0.2193
| Unknown | VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT2G47640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2263
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT2G39795 | PredictedAffinity Capture-MS | FSW = 0.3051
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5053
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.4865
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.3255
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3590
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.3992
| Unknown | UNKNOWN PROTEIN |
AT1G26480 | PredictedAffinity Capture-MS | FSW = 0.0823
| Unknown | GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.5398
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G63660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2805
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.5147
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.3471
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5570
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G27110 | PredictedAffinity Capture-MS | FSW = 0.0330
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4382
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G52560 | PredictedAffinity Capture-MS | FSW = 0.2846
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4879
| Unknown | HISTONE H4 |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.1806
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.4250
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.2469
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G12130 | PredictedSynthetic Lethality | FSW = 0.0160
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G13950 | PredictedSynthetic Lethality | FSW = 0.0057
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.4053
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.3815
| Unknown | MO25 FAMILY PROTEIN |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.4509
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.2806
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.4921
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3725
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.3801
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4527
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5147
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454