Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G19910 - ( RNA-dependent RNA polymerase family protein )
110 Proteins interacs with AT2G19910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.1249
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT3G12580 | PredictedAffinity Capture-Western | FSW = 0.1393
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G28710 | PredictedAffinity Capture-MS | FSW = 0.0371
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.3471
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT3G26590 | Predictedbiochemical | FSW = 0.0466
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2379
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4121
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.3193
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.2523
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.4096
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT1G74710 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.2939
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.4147
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5075
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G21640 | PredictedAffinity Capture-Western | FSW = 0.1437
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.1613
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT1G51040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3166
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT4G23430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3934
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.2272
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.2033
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G75840 | PredictedAffinity Capture-MS | FSW = 0.2861
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.5027
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G14120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1904
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5404
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.1796
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.4965
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.1050
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5812
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.3509
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G20760 | PredictedAffinity Capture-MS | FSW = 0.2056
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G70490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1915
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G53870 | Predictedbiochemical | FSW = 0.0119
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.2845
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT5G02490 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.1082
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.1757
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT4G13980 | Predictedbiochemical | FSW = 0.0176
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.3728
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.3016
| Unknown | HISTONE H2B PUTATIVE |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.0774
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT1G34065 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1620
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.2523
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3667
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G72480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3467
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.2637
| Unknown | BINDING |
AT5G57625 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4214
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2883
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.0839
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT3G08730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3181
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5111
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.1221
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.4768
| Unknown | UNKNOWN PROTEIN |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.2632
| Unknown | CORNICHON FAMILY PROTEIN |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.2911
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G02730 | PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G05785 | PredictedAffinity Capture-MS | FSW = 0.0636
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.2585
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G33770 | PredictedAffinity Capture-MS | FSW = 0.0456
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1618
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.3093
| Unknown | UNKNOWN PROTEIN |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.3024
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.4615
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.3606
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G70290 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.2704
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.4142
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.4803
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.2755
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.3815
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G32160 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.2854
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.2387
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5123
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5808
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G45080 | PredictedAffinity Capture-MS | FSW = 0.2512
| Unknown | CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2966
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G02000 | PredictedAffinity Capture-MS | FSW = 0.0609
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.2934
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G06470 | Predictedbiochemical | FSW = 0.0306
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5391
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.2937
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G18850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3028
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.2616
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.4025
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.3202
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.3600
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4569
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G51880 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4447
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5308
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4253
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G14240 | Predictedbiochemical | FSW = 0.0436
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G17380 | PredictedAffinity Capture-MS | FSW = 0.2387
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G19645 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3596
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G26810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3986
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4673
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.3093
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0280
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5354
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4111
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.3796
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4514
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.2046
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.3390
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G66640 | Predictedbiochemical | FSW = 0.0126
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.4628
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.2190
| Unknown | ATATG18A |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.3529
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.4290
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.3779
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454