Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G75840 - ( ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP binding / GTPase )
54 Proteins interacs with AT1G75840Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G38430 | Experimentaltwo hybridbiochemical | FSW = 0.1141
| Class A:plasma membraneClass B:nucleus | ROPGEF1 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ PROTEIN BINDING |
AT3G07880 | Experimentalpull downtwo hybridReconstituted Complex | FSW = 0.0903
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT3G66652 | Experimental | FSW = 0.0174
| Unknown | FIP1 MOTIF-CONTAINING PROTEIN |
AT1G01700 | Experimentaltwo hybridbiochemical | FSW = 0.0340
| Unknown | ROPGEF2 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ PROTEIN BINDING |
AT5G62880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0860
| Class C:plasma membranenucleus | ARAC10 GTP BINDING |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.2324
| Class C:plasma membranenucleus | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT4G28950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1088
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.3576
| Class C:plasma membrane | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G20090 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1131
| Class C:plasma membrane | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT4G35020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1130
| Class C:plasma membrane | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT2G44690 | PredictedSynthetic LethalityPhylogenetic profile methodCo-expression | FSW = 0.1910
| Class C:plasma membrane | ARAC9 GTP BINDING |
AT5G45970 | PredictedPhenotypic EnhancementPhylogenetic profile methodCo-expression | FSW = 0.1420
| Class C:plasma membrane | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT4G35950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1930
| Class C:plasma membrane | ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.2068
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.0835
| Class C:plasma membrane | ZINC ION BINDING |
AT3G48040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2773
| Class C:plasma membrane | ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3531
| Class C:plasma membrane | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G20440 | PredictedAffinity Capture-MS | FSW = 0.0155
| Class C:nucleus | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.3641
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1562
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3310
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.0328
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G14320 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0242
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT4G23430 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MS | FSW = 0.3233
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G26910 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.2945
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.3523
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2398
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G51300 | PredictedPhenotypic EnhancementPhylogenetic profile methodCo-expression | FSW = 0.1623
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
AT2G17800 | PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.1826
| Unknown | ARAC1 GTP BINDING |
AT2G18230 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT4G30800 | Predictedbiochemical | FSW = 0.0059
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G25260 | PredictedAffinity Capture-MS | FSW = 0.0028
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.4636
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.4022
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.3715
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.2403
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.3865
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3855
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2276
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G17380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3398
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.3262
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3039
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4233
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.1088
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2861
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.3589
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G11900 | PredictedAffinity Capture-MS | FSW = 0.3739
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.1862
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.3592
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1970
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20560 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT4G31170 | Predictedin vitro | FSW = 0.0585
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G16785 | Predictedin vitroEnriched domain pairCo-expression | FSW = 0.0517
| Unknown | PLDP1 (PHOSPHOLIPASE D P1) PHOSPHOLIPASE D |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454