Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G36860 - ( zinc ion binding )
105 Proteins interacs with AT4G36860| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G01250
   | PredictedAffinity Capture-MS | FSW = 0.1489
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT2G20450
| PredictedAffinity Capture-MS | FSW = 0.5641
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT1G22780
| PredictedAffinity Capture-MS | FSW = 0.6734
| Class C:plasma membrane | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G08710
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1540
| Class C:plasma membrane | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT3G56190
| PredictedAffinity Capture-MS | FSW = 0.4774
| Class C:plasma membrane | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT5G10450
| PredictedAffinity Capture-MS | FSW = 0.0345
| Class C:plasma membrane | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G15210
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.7060
| Class C:plasma membrane | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT3G08530
| PredictedAffinity Capture-MS | FSW = 0.0884
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
| AT5G60390
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5089
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT5G45420
| PredictedAffinity Capture-MS | FSW = 0.5254
| Class C:plasma membrane | MYB FAMILY TRANSCRIPTION FACTOR |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.5446
| Class C:plasma membrane | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G27970
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6185
| Class C:plasma membrane | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT1G75840
| PredictedAffinity Capture-MS | FSW = 0.0835
| Class C:plasma membrane | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
| AT2G14120
| PredictedAffinity Capture-MS | FSW = 0.1025
| Class C:plasma membrane | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
| AT2G21540
| PredictedAffinity Capture-MS | FSW = 0.1993
| Class C:plasma membrane | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
| AT3G04050
| PredictedAffinity Capture-MS | FSW = 0.0184
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
| AT3G55810
| PredictedAffinity Capture-MS | FSW = 0.0787
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
| AT5G23900
| PredictedAffinity Capture-MS | FSW = 0.0922
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
| AT1G50310
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3301
| Class C:plasma membrane | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G43370
| PredictedAffinity Capture-MS | FSW = 0.6976
| Class C:plasma membrane | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G62300
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4795
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
| AT1G13320
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2265
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
| AT3G02870
| PredictedAffinity Capture-MS | FSW = 0.0598
| Class C:plasma membrane | VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
| AT4G24400
| PredictedAffinity Capture-MS | FSW = 0.3723
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT1G09640
| PredictedAffinity Capture-MS | FSW = 0.5243
| Class C:plasma membrane | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
| AT4G32470
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6893
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT5G09590
| PredictedSynthetic Lethality | FSW = 0.0074
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.6184
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT3G57990
| PredictedSynthetic Lethality | FSW = 0.0320
| Unknown | UNKNOWN PROTEIN |
| AT3G62870
| PredictedSynthetic Lethality | FSW = 0.0539
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT2G29990
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1914
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
| AT3G08950
| PredictedAffinity Capture-MS | FSW = 0.6976
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
| AT2G19860
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5904
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT3G19980
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5519
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G65430
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1174
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.6185
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT5G13050
| PredictedAffinity Capture-MS | FSW = 0.6269
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.3477
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT1G56410
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0194
| Unknown | ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2) ATP BINDING |
| AT3G06040
| PredictedAffinity Capture-MS | FSW = 0.5791
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT2G35690
| PredictedAffinity Capture-MS | FSW = 0.5446
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| AT5G44500
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5378
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
| AT2G47640
| PredictedAffinity Capture-MS | FSW = 0.0955
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT3G13445
| PredictedAffinity Capture-MS | FSW = 0.1788
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT5G59870
| PredictedAffinity Capture-MS | FSW = 0.6572
| Unknown | HTA6 DNA BINDING |
| AT2G37470
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5155
| Unknown | HISTONE H2B PUTATIVE |
| AT3G20970
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1343
| Unknown | NFU4 STRUCTURAL MOLECULE |
| AT3G10920
| PredictedAffinity Capture-MS | FSW = 0.1713
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
| AT4G30990
| PredictedAffinity Capture-MS | FSW = 0.4362
| Unknown | BINDING |
| AT1G72480
| PredictedAffinity Capture-MS | FSW = 0.4750
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
| AT2G13650
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6114
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.4968
| Unknown | PSF2 |
| AT2G24040
| PredictedAffinity Capture-MS | FSW = 0.7061
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
| AT3G52580
| PredictedAffinity Capture-MS | FSW = 0.6400
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT5G41480
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5848
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT3G22880
| PredictedAffinity Capture-MS | FSW = 0.1494
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G47880
| PredictedAffinity Capture-MS | FSW = 0.6241
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
| AT1G33110
| PredictedAffinity Capture-MS | FSW = 0.5901
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT1G34580
| PredictedAffinity Capture-MS | FSW = 0.1991
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
| AT1G51770
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.7455
| Unknown | UNKNOWN PROTEIN |
| AT1G62880
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.7075
| Unknown | CORNICHON FAMILY PROTEIN |
| AT1G64480
| PredictedAffinity Capture-MS | FSW = 0.6253
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.5938
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G03667
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6160
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
| AT2G17620
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3440
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT2G29390
| PredictedAffinity Capture-MS | FSW = 0.4964
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
| AT2G32160
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0271
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
| AT2G35390
| PredictedAffinity Capture-MS | FSW = 0.2159
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
| AT2G42160
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2625
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
| AT2G43360
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2944
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
| AT2G46860
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6483
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT3G03180
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0064
| Unknown | GOT1-LIKE FAMILY PROTEIN |
| AT3G05540
| PredictedAffinity Capture-MS | FSW = 0.2412
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
| AT3G05960
| PredictedAffinity Capture-MS | FSW = 0.4618
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.5492
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT3G30842
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5552
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G57550
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1771
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
| AT3G62770
| PredictedAffinity Capture-MS | FSW = 0.4381
| Unknown | ATATG18A |
| AT4G17770
| PredictedAffinity Capture-MS | FSW = 0.6647
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT4G25860
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6086
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
| AT4G26230
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4050
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
| AT1G11530
| PredictedAffinity Capture-MS | FSW = 0.5651
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
| AT1G20696
| PredictedAffinity Capture-MS | FSW = 0.5814
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G20920
| PredictedAffinity Capture-MS | FSW = 0.3042
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G26140
| PredictedAffinity Capture-MS | FSW = 0.0918
| Unknown | UNKNOWN PROTEIN |
| AT1G76720
| PredictedAffinity Capture-MS | FSW = 0.6873
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.1040
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT2G41530
| PredictedAffinity Capture-MS | FSW = 0.3042
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
| AT3G11900
| PredictedAffinity Capture-MS | FSW = 0.1582
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
| AT3G12690
| PredictedAffinity Capture-MS | FSW = 0.7018
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT3G20650
| PredictedAffinity Capture-MS | FSW = 0.4743
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.4083
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G52390
| PredictedAffinity Capture-MS | FSW = 0.5430
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT3G63280
| PredictedAffinity Capture-MS | FSW = 0.0774
| Unknown | ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G33070
| PredictedAffinity Capture-MS | FSW = 0.1375
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
| AT5G09390
| PredictedAffinity Capture-MS | FSW = 0.4302
| Unknown | CD2-BINDING PROTEIN-RELATED |
| AT5G19150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1978
| Unknown | CARBOHYDRATE KINASE FAMILY |
| AT5G19660
| PredictedAffinity Capture-MS | FSW = 0.5521
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
| AT5G46150
| PredictedAffinity Capture-MS | FSW = 0.2223
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.5479
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G09630
| PredictedAffinity Capture-MS | FSW = 0.5985
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT5G19820
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5182
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.5469
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT5G57330
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1262
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
| AT5G57890
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3510
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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