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AT1G22780 - ( PFL (POINTED FIRST LEAVES) RNA binding / nucleic acid binding / structural constituent of ribosome )

100 Proteins interacs with AT1G22780

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.5053	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT3G56190	Predicted Affinity Capture-MS	FSW = 0.5037	Class C: vacuole plasma membrane	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.0349	Class C: vacuole plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G04270	Predicted Enriched domain pair Gene neighbors method Co-expression	FSW = 0.0216	Class C: vacuole plasma membrane	RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G08710	Predicted Affinity Capture-MS	FSW = 0.1599	Class C: vacuole plasma membrane	ATH9 (THIOREDOXIN H-TYPE 9)
AT4G32470	Predicted Affinity Capture-MS	FSW = 0.6748	Class C: vacuole	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT1G07930	Predicted Affinity Capture-MS	FSW = 0.6742	Class C: vacuole	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G34030	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.1815	Class C: vacuole	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT3G08530	Predicted Affinity Capture-MS	FSW = 0.0921	Class C: plasma membrane	CLATHRIN HEAVY CHAIN PUTATIVE
AT1G15210	Predicted Affinity Capture-MS	FSW = 0.7032	Class C: plasma membrane	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.4871	Class C: plasma membrane	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G45420	Predicted Affinity Capture-MS	FSW = 0.5428	Class C: plasma membrane	MYB FAMILY TRANSCRIPTION FACTOR
AT3G01610	Predicted Affinity Capture-MS	FSW = 0.0120	Class C: plasma membrane	CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G23740	Predicted Affinity Capture-MS	FSW = 0.5237	Class C: plasma membrane	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G27970	Predicted Affinity Capture-MS	FSW = 0.4913	Class C: plasma membrane	NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.0316	Class C: plasma membrane	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G55810	Predicted Affinity Capture-MS	FSW = 0.0708	Class C: plasma membrane	PYRUVATE KINASE PUTATIVE
AT4G36860	Predicted Affinity Capture-MS	FSW = 0.6734	Class C: plasma membrane	ZINC ION BINDING
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.3640	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT1G50310	Predicted Affinity Capture-MS	FSW = 0.3552	Class C: plasma membrane	STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G43370	Predicted Affinity Capture-MS	FSW = 0.6819	Class C: plasma membrane	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G22300	Predicted Affinity Capture-MS	FSW = 0.1811	Class C: plasma membrane	GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G20580	Predicted Affinity Capture-MS	FSW = 0.0303	Class C: plasma membrane	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G09640	Predicted Affinity Capture-MS	FSW = 0.5292	Class C: plasma membrane	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT3G08950	Predicted Affinity Capture-MS	FSW = 0.6819	Unknown	ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT2G19860	Predicted Affinity Capture-MS	FSW = 0.5779	Unknown	HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G19980	Predicted Affinity Capture-MS	FSW = 0.5210	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G16950	Predicted Affinity Capture-MS	FSW = 0.5848	Unknown	LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT3G44610	Predicted Affinity Capture-MS	FSW = 0.2314	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT5G13050	Predicted Affinity Capture-MS	FSW = 0.6211	Unknown	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT3G11630	Predicted Affinity Capture-MS	FSW = 0.3244	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT3G06040	Predicted Affinity Capture-MS	FSW = 0.5984	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G35690	Predicted Affinity Capture-MS	FSW = 0.5493	Unknown	ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT5G44500	Predicted Affinity Capture-MS	FSW = 0.4913	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT4G09800	Predicted Phylogenetic profile method Co-expression	FSW = 0.0062	Unknown	RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G59870	Predicted Affinity Capture-MS	FSW = 0.7040	Unknown	HTA6 DNA BINDING
AT1G72440	Predicted Affinity Capture-MS	FSW = 0.0233	Unknown	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT1G04510	Predicted Co-purification Co-expression	FSW = 0.0016	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G13445	Predicted Affinity Capture-MS	FSW = 0.2093	Unknown	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT2G37470	Predicted Affinity Capture-MS	FSW = 0.4735	Unknown	HISTONE H2B PUTATIVE
AT3G55410	Predicted Affinity Capture-MS	FSW = 0.0157	Unknown	2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE
AT4G30990	Predicted Affinity Capture-MS	FSW = 0.4617	Unknown	BINDING
AT1G72480	Predicted Affinity Capture-MS	FSW = 0.4511	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G13650	Predicted Affinity Capture-MS	FSW = 0.5851	Unknown	GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT3G16050	Predicted Affinity Capture-MS	FSW = 0.2645	Unknown	A37 PROTEIN HETERODIMERIZATION
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0052	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT3G12530	Predicted Affinity Capture-MS	FSW = 0.4604	Unknown	PSF2
AT3G52580	Predicted Affinity Capture-MS	FSW = 0.6810	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT5G41480	Predicted Affinity Capture-MS	FSW = 0.5224	Unknown	GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT5G47880	Predicted Affinity Capture-MS	FSW = 0.6306	Unknown	ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT2G24040	Predicted Affinity Capture-MS	FSW = 0.7518	Unknown	HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT1G05650	Predicted Affinity Capture-MS	FSW = 0.4120	Unknown	POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G11530	Predicted Affinity Capture-MS	FSW = 0.5700	Unknown	ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G20696	Predicted Affinity Capture-MS	FSW = 0.5535	Unknown	HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G33110	Predicted Affinity Capture-MS	FSW = 0.5947	Unknown	MATE EFFLUX FAMILY PROTEIN
AT1G34580	Predicted Affinity Capture-MS	FSW = 0.1541	Unknown	MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G64480	Predicted Affinity Capture-MS	FSW = 0.5742	Unknown	CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G76720	Predicted Affinity Capture-MS	FSW = 0.7091	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT2G21250	Predicted Affinity Capture-MS	FSW = 0.3221	Unknown	MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G41530	Predicted Affinity Capture-MS	FSW = 0.2171	Unknown	SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT3G05540	Predicted Affinity Capture-MS	FSW = 0.2509	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT3G05960	Predicted Affinity Capture-MS	FSW = 0.3944	Unknown	STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G12690	Predicted Affinity Capture-MS	FSW = 0.6639	Unknown	AGC15 (AGC KINASE 15) KINASE
AT3G16840	Predicted Affinity Capture-MS	FSW = 0.0217	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G19940	Predicted Affinity Capture-MS	FSW = 0.4914	Unknown	SUGAR TRANSPORTER PUTATIVE
AT3G20650	Predicted Affinity Capture-MS	FSW = 0.4055	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G23570	Predicted Affinity Capture-MS	FSW = 0.3990	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.0212	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G30842	Predicted Affinity Capture-MS	FSW = 0.4506	Unknown	PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G48780	Predicted Affinity Capture-MS	FSW = 0.0767	Unknown	SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE
AT3G52390	Predicted Affinity Capture-MS	FSW = 0.5270	Unknown	TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT4G17770	Predicted Affinity Capture-MS	FSW = 0.7222	Unknown	ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G33070	Predicted Affinity Capture-MS	FSW = 0.1063	Unknown	PYRUVATE DECARBOXYLASE PUTATIVE
AT5G09390	Predicted Affinity Capture-MS	FSW = 0.4585	Unknown	CD2-BINDING PROTEIN-RELATED
AT5G09630	Predicted Affinity Capture-MS	FSW = 0.5790	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT5G19150	Predicted Affinity Capture-MS	FSW = 0.1323	Unknown	CARBOHYDRATE KINASE FAMILY
AT5G19660	Predicted Affinity Capture-MS	FSW = 0.5966	Unknown	S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE
AT5G66640	Predicted biochemical	FSW = 0.0036	Unknown	DAR3 (DA1-RELATED PROTEIN 3)
AT1G51770	Predicted Affinity Capture-MS	FSW = 0.7000	Unknown	UNKNOWN PROTEIN
AT1G59730	Predicted Affinity Capture-MS	FSW = 0.1823	Unknown	ATH7 (THIOREDOXIN H-TYPE 7)
AT1G62880	Predicted Affinity Capture-MS	FSW = 0.6593	Unknown	CORNICHON FAMILY PROTEIN
AT1G71280	Predicted Affinity Capture-MS	FSW = 0.5895	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G03667	Predicted Affinity Capture-MS	FSW = 0.4811	Unknown	ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT2G29390	Predicted Affinity Capture-MS	FSW = 0.5135	Unknown	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT2G35390	Predicted Affinity Capture-MS	FSW = 0.1659	Unknown	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G46860	Predicted Affinity Capture-MS	FSW = 0.6054	Unknown	ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G62770	Predicted Affinity Capture-MS	FSW = 0.4309	Unknown	ATATG18A
AT4G25860	Predicted Affinity Capture-MS	FSW = 0.5070	Unknown	ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING
AT4G26230	Predicted Affinity Capture-MS	FSW = 0.3494	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G39330	Predicted Affinity Capture-MS	FSW = 0.4913	Unknown	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.4138	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G41190	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.5919	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT1G31660	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.0298	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT5G09900	Predicted Affinity Capture-MS	FSW = 0.0133	Unknown	EMB2107 (EMBRYO DEFECTIVE 2107)
AT4G27640	Predicted Affinity Capture-MS	FSW = 0.0227	Unknown	IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT3G51270	Predicted Affinity Capture-MS	FSW = 0.0412	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT1G18830	Predicted Affinity Capture-MS	FSW = 0.0114	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G15440	Predicted Affinity Capture-MS Co-expression	FSW = 0.0342	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G41860	Predicted in vivo	FSW = 0.0046	Unknown	CPK14 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G54140	Predicted Synthetic Lethality	FSW = 0.0109	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT1G22780 - ( PFL (POINTED FIRST LEAVES) RNA binding / nucleic acid binding / structural constituent of ribosome )

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