Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G31660 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 21 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Bystin (InterProIPR007955) Has 370 Blast hits to 362 proteins in 156 species Archae - 0 Bacteria - 7 Metazoa - 139 Fungi - 93 Plants - 32 Viruses - 0 Other Eukaryotes - 99 (source NCBI BLink) )
89 Proteins interacs with AT1G31660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G67500 | PredictedAffinity Capture-MS | FSW = 0.0354
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT3G04920 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1616
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.1865
| Unknown | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1316
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G27400 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0631
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17A) |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0828
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT2G17360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2480
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G31610 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1202
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3A) |
AT5G15200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3846
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT1G67430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1673
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT1G22780 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0298
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2761
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.1605
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT1G34030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1046
| Unknown | 40S RIBOSOMAL PROTEIN S18 (RPS18B) |
AT4G18730 | PredictedAffinity Capture-MS | FSW = 0.0722
| Unknown | RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G60770 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1641
| Unknown | 40S RIBOSOMAL PROTEIN S13 (RPS13A) |
AT2G29080 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0138
| Unknown | FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE |
AT1G07510 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G72370 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0991
| Unknown | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G20290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4105
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT1G48830 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1323
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
AT1G18080 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0666
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT1G16030 | PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT3G06530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4074
| Unknown | BINDING |
AT3G04770 | PredictedAffinity Capture-MS | FSW = 0.0841
| Unknown | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G11510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1981
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT3G11964 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2048
| Unknown | RNA BINDING |
AT2G04390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1977
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT4G00100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4760
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G48930 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0278
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G73180 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0871
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED |
AT2G25070 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0329
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT3G53870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1937
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT5G57015 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSbiochemicalinteraction prediction | FSW = 0.0779
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0897
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G19310 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT1G63780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1571
| Unknown | IMP4 |
AT1G63810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4181
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT5G04600 | PredictedAffinity Capture-MS | FSW = 0.1715
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G50670 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0013
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G25630 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2942
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G56990 | PredictedAffinity Capture-MS | FSW = 0.3260
| Unknown | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
AT3G21540 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2986
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G06010 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G57150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1359
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT4G19610 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1396
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G18130 | PredictedAffinity Capture-MS | FSW = 0.0922
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT3G12860 | PredictedAffinity Capture-MS | FSW = 0.3816
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT1G56110 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0656
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT5G66540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4935
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
AT3G57000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4027
| Unknown | NUCLEOLAR ESSENTIAL PROTEIN-RELATED |
AT5G58420 | PredictedAffinity Capture-MS | FSW = 0.3040
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT4G30990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0613
| Unknown | BINDING |
AT2G47990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2919
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT4G33150 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE BIFUNCTIONAL ENZYME |
AT5G59240 | PredictedAffinity Capture-MS | FSW = 0.2775
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
AT5G22100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2381
| Unknown | RNA CYCLASE FAMILY PROTEIN |
AT1G10490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4388
| Unknown | UNKNOWN PROTEIN |
AT3G10090 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0625
| Unknown | 40S RIBOSOMAL PROTEIN S28 (RPS28A) |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.2742
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G06720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3720
| Unknown | INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK) |
AT1G08880 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0432
| Unknown | H2AXA DNA BINDING |
AT1G15440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2965
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G16280 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0556
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G42440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3127
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT1G54290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0077
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G67190 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | F-BOX FAMILY PROTEIN |
AT1G69070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4888
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
AT1G72320 | PredictedAffinity Capture-MS | FSW = 0.2497
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
AT2G16950 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0321
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT2G17250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5309
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
AT3G24080 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3039
| Unknown | KRR1 FAMILY PROTEIN |
AT3G51270 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.3894
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
AT4G30991 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4071
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
AT5G08420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5089
| Unknown | RNA BINDING |
AT5G41190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1396
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT2G24990 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | RIO1 FAMILY PROTEIN |
AT2G34357 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4298
| Unknown | BINDING |
AT2G47420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3675
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
AT3G07890 | PredictedAffinity Capture-MS | FSW = 0.0592
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G10530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4083
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G13230 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3030
| Unknown | RNA BINDING |
AT4G07410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3967
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G28200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4612
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
AT4G28450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3532
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G15750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3612
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
AT1G27470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1984
| Unknown | TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED |
AT1G33390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1081
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454