Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G31660 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 21 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Bystin (InterProIPR007955) Has 370 Blast hits to 362 proteins in 156 species Archae - 0 Bacteria - 7 Metazoa - 139 Fungi - 93 Plants - 32 Viruses - 0 Other Eukaryotes - 99 (source NCBI BLink) )

89 Proteins interacs with AT1G31660
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G67500

Predicted

Affinity Capture-MS

FSW = 0.0354

Unknown

VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT3G04920

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1616

Unknown

40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT4G31700

Predicted

Affinity Capture-MS

FSW = 0.1865

Unknown

RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1316

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT1G27400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0631

Unknown

60S RIBOSOMAL PROTEIN L17 (RPL17A)
AT2G36160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0828

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G17360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2480

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G31610

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1202

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3A)
AT5G15200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3846

Unknown

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT1G67430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1673

Unknown

60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT1G22780

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0298

Unknown

PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2761

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G66580

Predicted

Affinity Capture-MS

FSW = 0.1605

Unknown

60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT1G34030Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1046

Unknown

40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT4G18730Predicted

Affinity Capture-MS

FSW = 0.0722

Unknown

RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G14320

Predicted

Affinity Capture-MS

FSW = 0.0254

Unknown

SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G60770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1641

Unknown

40S RIBOSOMAL PROTEIN S13 (RPS13A)
AT2G29080

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0138

Unknown

FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE
AT1G07510

Predicted

Affinity Capture-MS

FSW = 0.0143

Unknown

FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G72370

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0991

Unknown

P40 STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4105

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G48830

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1323

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT1G18080

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0666

Unknown

ATARCA NUCLEOTIDE BINDING
AT1G16030

Predicted

Affinity Capture-MS

FSW = 0.0061

Unknown

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT3G06530

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4074

Unknown

BINDING
AT3G04770

Predicted

Affinity Capture-MS

FSW = 0.0841

Unknown

RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G11510

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1981

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT3G11964Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2048

Unknown

RNA BINDING
AT2G04390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1977

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT4G00100

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4760

Unknown

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G48930

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0278

Unknown

EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G73180

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0871

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED
AT2G25070

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0329

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT3G53870

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1937

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G57015

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

biochemical

interaction prediction

FSW = 0.0779

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0897

Unknown

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G19310

Predicted

Affinity Capture-MS

FSW = 0.0107

Unknown

HOMEOTIC GENE REGULATOR PUTATIVE
AT1G63780

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1571

Unknown

IMP4
AT1G63810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4181

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT5G04600

Predicted

Affinity Capture-MS

FSW = 0.1715

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G50670

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0013

Unknown

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G25630

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2942

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G56990

Predicted

Affinity Capture-MS

FSW = 0.3260

Unknown

EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT3G21540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2986

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G06010

Predicted

Affinity Capture-MS

FSW = 0.0148

Unknown

ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G57150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1359

Unknown

NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G19610Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1396

Unknown

RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G18130

Predicted

Affinity Capture-MS

FSW = 0.0922

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT3G12860

Predicted

Affinity Capture-MS

FSW = 0.3816

Unknown

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT1G56110

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0656

Unknown

NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56)
AT5G66540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4935

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT3G57000

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4027

Unknown

NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT5G58420

Predicted

Affinity Capture-MS

FSW = 0.3040

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT4G30990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0613

Unknown

BINDING
AT2G47990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2919

Unknown

SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT4G33150

Predicted

Affinity Capture-MS

FSW = 0.0238

Unknown

LYSINE-KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE BIFUNCTIONAL ENZYME
AT5G59240

Predicted

Affinity Capture-MS

FSW = 0.2775

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT5G22100

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2381

Unknown

RNA CYCLASE FAMILY PROTEIN
AT1G10490

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4388

Unknown

UNKNOWN PROTEIN
AT3G10090Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0625

Unknown

40S RIBOSOMAL PROTEIN S28 (RPS28A)
AT4G30800

Predicted

Affinity Capture-MS

FSW = 0.2742

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT1G06720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3720

Unknown

INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G08880

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0432

Unknown

H2AXA DNA BINDING
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2965

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G16280

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0556

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G42440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3127

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G54290

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0077

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT1G67190

Predicted

Affinity Capture-MS

FSW = 0.0204

Unknown

F-BOX FAMILY PROTEIN
AT1G69070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4888

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT1G72320

Predicted

Affinity Capture-MS

FSW = 0.2497

Unknown

APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT2G16950

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0321

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G17250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5309

Unknown

EMB2762 (EMBRYO DEFECTIVE 2762)
AT3G24080

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3039

Unknown

KRR1 FAMILY PROTEIN
AT3G51270

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

interaction prediction

Co-expression

FSW = 0.3894

Unknown

ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT4G30991Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4071

Unknown

ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT5G08420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5089

Unknown

RNA BINDING
AT5G41190

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1396

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT2G24990

Predicted

Affinity Capture-MS

FSW = 0.0112

Unknown

RIO1 FAMILY PROTEIN
AT2G34357Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4298

Unknown

BINDING
AT2G47420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3675

Unknown

DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT3G07890

Predicted

Affinity Capture-MS

FSW = 0.0592

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT3G10530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4083

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G13230

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3030

Unknown

RNA BINDING
AT4G07410

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3967

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G28200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4612

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G28450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3532

Unknown

NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G15750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.3612

Unknown

RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT1G27470

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1984

Unknown

TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED
AT1G33390

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1081

Unknown

HELICASE DOMAIN-CONTAINING PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454