Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G04770 - ( RPSAb (40S ribosomal protein SA B) structural constituent of ribosome )
45 Proteins interacs with AT3G04770| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G09630
   | PredictedAffinity Capture-MS | FSW = 0.0616
| Class C:plastid | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT5G15200
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1177
| Class C:plastid | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT1G72370
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5030
| Class C:plastid | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G20290
| PredictedAffinity Capture-MS | FSW = 0.0947
| Class C:plastid | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| ATCG00480 | Predictedtwo hybrid | FSW = 0.0432
| Class C:plastid | CHLOROPLAST-ENCODED GENE FOR BETA SUBUNIT OF ATP SYNTHASE |
| AT2G04350
| Predictedinteraction prediction | FSW = 0.0256
| Class C:plastid | LONG-CHAIN-FATTY-ACID--COA LIGASE FAMILY PROTEIN / LONG-CHAIN ACYL-COA SYNTHETASE FAMILY PROTEIN (LACS8) |
| AT5G36880
| PredictedAffinity Capture-MS | FSW = 0.0490
| Class C:plastid | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
| AT5G67630
| PredictedAffinity Capture-MS | FSW = 0.0330
| Class C:plastid | DNA HELICASE PUTATIVE |
| AT1G16880
| PredictedPhenotypic Enhancement | FSW = 0.0283
| Class C:plastid | URIDYLYLTRANSFERASE-RELATED |
| AT2G45300
| PredictedAffinity Capture-MS | FSW = 0.0322
| Class C:plastid | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
| AT5G53460
| PredictedAffinity Capture-MS | FSW = 0.0294
| Class C:plastid | GLT1 GLUTAMATE SYNTHASE (NADH) |
| AT2G33340
| PredictedCo-purification | FSW = 0.0156
| Class C:plastid | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G11630
| Predictedsynthetic growth defect | FSW = 0.0107
| Class C:plastid | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT4G14960
| PredictedAffinity Capture-MS | FSW = 0.0801
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT3G23990
| PredictedAffinity Capture-MS | FSW = 0.0514
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0079
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT5G25780
| PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
| AT5G20020
| Predictedtwo hybrid | FSW = 0.0280
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT5G38480
| Predictedtwo hybridinteraction prediction | FSW = 0.0120
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT4G11420
| PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
| AT4G19610 | PredictedAffinity Capture-MS | FSW = 0.0692
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G53020
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0710
| Unknown | STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G17690
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0081
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
| AT2G20510
| PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
| AT1G70320
| PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0817
| Unknown | UPL2 (UBIQUITIN-PROTEIN LIGASE 2) UBIQUITIN-PROTEIN LIGASE |
| AT1G79750
| PredictedAffinity Capture-MS | FSW = 0.0528
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
| AT4G30800
| PredictedAffinity Capture-MS | FSW = 0.0996
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT2G46520
| PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE |
| AT2G32850
| Predictedtwo hybrid | FSW = 0.0316
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G27700
| PredictedPhenotypic Enhancementtwo hybrid | FSW = 0.0196
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G25580
| Predictedtwo hybrid | FSW = 0.0193
| Unknown | THIOREDOXIN-RELATED |
| AT2G22480
| PredictedAffinity Capture-MS | FSW = 0.0804
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
| AT1G03530
| PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G06830
| Predictedinterologs mappinginterologs mapping | FSW = 0.0068
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
| AT1G10170
| PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT1G31660
| PredictedAffinity Capture-MS | FSW = 0.0841
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT1G55150
| PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
| AT1G73570
| PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
| AT3G24080
| PredictedAffinity Capture-MS | FSW = 0.0752
| Unknown | KRR1 FAMILY PROTEIN |
| AT3G51270
| PredictedAffinity Capture-MS | FSW = 0.0840
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
| AT5G02880
| PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
| AT5G08420
| PredictedAffinity Capture-MS | FSW = 0.0572
| Unknown | RNA BINDING |
| AT5G27970 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | BINDING |
| AT5G55090
| PredictedPhenotypic Suppression | FSW = 0.0123
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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