Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G51270 - ( ATP binding / catalytic/ protein serine/threonine kinase )
36 Proteins interacs with AT3G51270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.1062
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.2939
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.0412
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1799
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G34030 | PredictedAffinity Capture-MS | FSW = 0.1138
| Unknown | 40S RIBOSOMAL PROTEIN S18 (RPS18B) |
AT3G60770 | PredictedAffinity Capture-MS | FSW = 0.1015
| Unknown | 40S RIBOSOMAL PROTEIN S13 (RPS13A) |
AT1G72370 | PredictedAffinity Capture-MS | FSW = 0.1304
| Unknown | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G20290 | PredictedAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.1659
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT3G04770 | PredictedAffinity Capture-MS | FSW = 0.0840
| Unknown | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G58510 | PredictedAffinity Capture-MS | FSW = 0.1875
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT2G04390 | PredictedAffinity Capture-MS | FSW = 0.1709
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT4G00100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2264
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G53890 | PredictedAffinity Capture-MS | FSW = 0.0459
| Unknown | 40S RIBOSOMAL PROTEIN S21 (RPS21B) |
AT1G73180 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1536
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED |
AT3G53870 | Predictedco-fractionationCo-fractionation | FSW = 0.0926
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT2G42520 | PredictedAffinity Capture-MS | FSW = 0.0728
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT5G57015 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationinteraction prediction | FSW = 0.1252
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1434
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G21700 | PredictedAffinity Capture-MS | FSW = 0.0403
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT5G19310 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0445
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT2G33610 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0881
| Unknown | ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING |
AT3G17590 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0372
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT3G06010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0507
| Unknown | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G59240 | Predictedco-fractionationCo-fractionation | FSW = 0.2371
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
AT3G10090 | PredictedAffinity Capture-MS | FSW = 0.1035
| Unknown | 40S RIBOSOMAL PROTEIN S28 (RPS28A) |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.1799
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G31660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.3894
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT1G42440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationinteraction prediction | FSW = 0.4154
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT2G34357 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1488
| Unknown | BINDING |
AT2G47420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationinteraction prediction | FSW = 0.2401
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
AT3G13230 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.1904
| Unknown | RNA BINDING |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.0749
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT5G27990 | PredictedAffinity Capture-MS | FSW = 0.0566
| Unknown | UNKNOWN PROTEIN |
AT5G41190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.1877
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT1G36240 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT1G30580 | Predictedtwo hybrid | FSW = 0.0100
| Unknown | GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454