Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G53890 - ( 40S ribosomal protein S21 (RPS21B) )
29 Proteins interacs with AT3G53890Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G72370![]() ![]() ![]() ![]() | PredictedPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-Westerntwo hybridCo-expression | FSW = 0.0571
| Class C:plasma membranecytosol | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G09990![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0063
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT3G47370![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0224
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT5G60790![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0149
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
AT5G12480![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0051
| Class C:plasma membrane | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G57990![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0340
| Unknown | UNKNOWN PROTEIN |
AT4G18160![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | KCO6 OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT3G62870![]() ![]() ![]() ![]() | Predictedsynthetic growth defect | FSW = 0.0111
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G19660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0642
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G06380![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G58660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT5G19310![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0292
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT3G14290![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationtwo hybrid | FSW = 0.1104
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G17190![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT2G20290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0219
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT1G03530![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT2G13680![]() ![]() ![]() ![]() | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0096
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT2G31020![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G47090![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G11450![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0280
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT3G49880![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G51270![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0459
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
AT3G53030![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G36050![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0476
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G08420![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | RNA BINDING |
AT4G35620![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G57330![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0312
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT1G62170![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0714
| Unknown | SERPIN FAMILY PROTEIN / SERINE PROTEASE INHIBITOR FAMILY PROTEIN |
AT5G27700![]() ![]() ![]() ![]() | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0714
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
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Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454