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AT5G19310 - ( homeotic gene regulator putative )

92 Proteins interacs with AT5G19310

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.0103	Class C: nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.0228	Class C: nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G63130	Predicted interologs mapping synthetic growth defect	FSW = 0.0157	Class C: nucleus	RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING
AT5G59690	Predicted Synthetic Rescue Synthetic Rescue Affinity Capture-Western	FSW = 0.1153	Class C: nucleus	HISTONE H4
AT1G26880	Predicted Affinity Capture-MS	FSW = 0.0168	Class C: nucleus	60S RIBOSOMAL PROTEIN L34 (RPL34A)
AT1G21700	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification Co-purification Co-purification Co-purification two hybrid Co-purification Affinity Capture-Western Affinity Capture-MS	FSW = 0.0701	Class C: nucleus	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT4G34430	Predicted Co-purification far western blotting Reconstituted Complex	FSW = 0.0345	Class C: nucleus	CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G75340	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.0421	Class C: nucleus	ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT5G14170	Predicted Co-purification	FSW = 0.0284	Class C: nucleus	CHC1
AT3G01890	Predicted Affinity Capture-MS Affinity Capture-MS Co-purification	FSW = 0.1225	Class C: nucleus	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G54610	Predicted Phenotypic Enhancement synthetic growth defect Synthetic Lethality Phenotypic Enhancement Synthetic Lethality synthetic growth defect interaction prediction	FSW = 0.1538	Class C: nucleus	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G12810	Predicted Phenotypic Suppression Phenotypic Suppression	FSW = 0.0934	Class C: nucleus	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G03415	Predicted Phenotypic Enhancement Phenotypic Enhancement Co-expression	FSW = 0.0309	Class C: nucleus	DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION
AT3G13445	Predicted Affinity Capture-Western Synthetic Lethality interologs mapping	FSW = 0.0610	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G44530	Predicted Affinity Capture-Western interaction prediction	FSW = 0.0575	Class C: nucleus	HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G33610	Predicted interaction prediction interologs mapping	FSW = 0.2335	Class C: nucleus	ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING
AT4G24440	Predicted interologs mapping Synthetic Lethality	FSW = 0.0469	Class C: nucleus	TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S)
AT1G18450	Predicted Co-purification	FSW = 0.0428	Class C: nucleus	ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G47620	Predicted two hybrid interologs mapping interaction prediction	FSW = 0.1015	Class C: nucleus	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT3G57300	Predicted Phenotypic Enhancement	FSW = 0.0529	Class C: nucleus	INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.0178	Class C: nucleus	RNA HELICASE PUTATIVE
AT2G27470	Predicted Affinity Capture-Western Co-purification	FSW = 0.0831	Class C: nucleus	NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT1G07470	Predicted interologs mapping	FSW = 0.0262	Class C: nucleus	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT1G65440	Predicted Synthetic Rescue Synthetic Rescue	FSW = 0.0377	Class C: nucleus	GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT2G13370	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.0623	Class C: nucleus	CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G38560	Predicted Synthetic Lethality	FSW = 0.0689	Class C: nucleus	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT3G17590	Predicted Phenotypic Enhancement Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification Co-purification Co-purification Phenotypic Enhancement Phenotypic Enhancement Affinity Capture-Western Co-purification Affinity Capture-MS interaction prediction	FSW = 0.1823	Class C: nucleus	BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT2G41840	Predicted Affinity Capture-MS	FSW = 0.0114	Class C: nucleus	40S RIBOSOMAL PROTEIN S2 (RPS2C)
AT4G16660	Predicted Phenotypic Suppression	FSW = 0.0198	Unknown	HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT3G15710	Predicted Phenotypic Enhancement	FSW = 0.0393	Unknown	SIGNAL PEPTIDASE PUTATIVE
AT1G69620	Predicted Affinity Capture-MS	FSW = 0.0375	Unknown	RPL34 (RIBOSOMAL PROTEIN L34) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G10350	Predicted biochemical Affinity Capture-Western	FSW = 0.0209	Unknown	POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT4G18730	Predicted Affinity Capture-MS	FSW = 0.0264	Unknown	RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G09650	Predicted Affinity Capture-Western	FSW = 0.0456	Unknown	ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT5G58230	Predicted Affinity Capture-Western Co-purification	FSW = 0.1096	Unknown	MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT2G01320	Predicted Phenotypic Enhancement	FSW = 0.0383	Unknown	ABC TRANSPORTER FAMILY PROTEIN
ATCG00790	Predicted Affinity Capture-MS	FSW = 0.0099	Unknown	CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT
AT4G38740	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0251	Unknown	ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G53890	Predicted two hybrid	FSW = 0.0292	Unknown	40S RIBOSOMAL PROTEIN S21 (RPS21B)
AT1G75170	Predicted Co-purification	FSW = 0.0083	Unknown	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT5G52640	Predicted Synthetic Lethality	FSW = 0.0160	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G08570	Predicted Phenotypic Enhancement	FSW = 0.0044	Unknown	PYRUVATE KINASE PUTATIVE
AT1G54080	Predicted interaction prediction	FSW = 0.0107	Unknown	OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT1G06390	Predicted Phenotypic Suppression Phenotypic Suppression	FSW = 0.0338	Unknown	GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.0103	Unknown	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT1G15930	Predicted Affinity Capture-MS	FSW = 0.0211	Unknown	40S RIBOSOMAL PROTEIN S12 (RPS12A)
AT5G13640	Predicted Phenotypic Suppression	FSW = 0.0536	Unknown	ATPDAT PHOSPHATIDYLCHOLINE-STEROL O-ACYLTRANSFERASE
AT2G23380	Predicted Phenotypic Enhancement	FSW = 0.0559	Unknown	CLF (CURLY LEAF) TRANSCRIPTION FACTOR
AT4G16420	Predicted Colocalization synthetic growth defect	FSW = 0.0786	Unknown	ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0178	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT4G02020	Predicted Phenotypic Enhancement	FSW = 0.0560	Unknown	SWN (SWINGER) TRANSCRIPTION FACTOR
AT3G14290	Predicted two hybrid	FSW = 0.0309	Unknown	PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G12280	Predicted Phenotypic Enhancement	FSW = 0.0131	Unknown	RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G66740	Predicted Phenotypic Enhancement Phenotypic Suppression Phenotypic Enhancement	FSW = 0.0547	Unknown	SGA2
AT3G61740	Predicted Phenotypic Suppression Phenotypic Enhancement Phenotypic Suppression Phenotypic Suppression Phenotypic Suppression Phenotypic Suppression Phenotypic Suppression Phenotypic Suppression Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Suppression	FSW = 0.0297	Unknown	SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G16680	Predicted Reconstituted Complex co-fractionation Co-fractionation Co-purification Reconstituted Complex Affinity Capture-Western Co-purification Affinity Capture-Western Co-purification Co-purification Reconstituted Complex Reconstituted Complex Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.0536	Unknown	PHD FINGER FAMILY PROTEIN
AT1G44120	Predicted Phenotypic Suppression	FSW = 0.0537	Unknown	C2 DOMAIN-CONTAINING PROTEIN / ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
AT5G46250	Predicted Phenotypic Suppression Phenotypic Suppression	FSW = 0.0767	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G07950	Predicted Co-purification	FSW = 0.0179	Unknown	UNKNOWN PROTEIN
AT5G16270	Predicted Co-purification	FSW = 0.0054	Unknown	SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4)
AT1G13950	Predicted two hybrid	FSW = 0.0402	Unknown	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR
AT1G32130	Predicted Synthetic Rescue Phenotypic Suppression	FSW = 0.1592	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G49760	Predicted Affinity Capture-MS	FSW = 0.0109	Unknown	PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G52740	Predicted Synthetic Lethality	FSW = 0.1086	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT2G33240	Predicted Colocalization	FSW = 0.0275	Unknown	XID MOTOR/ PROTEIN BINDING
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.0284	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G46320	Predicted Affinity Capture-Western	FSW = 0.1264	Unknown	HISTONE H4
AT3G49660	Predicted Phenotypic Suppression	FSW = 0.0575	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G51520	Predicted Phenotypic Enhancement	FSW = 0.0550	Unknown	DIACYLGLYCEROL ACYLTRANSFERASE FAMILY
AT3G55170	Predicted Affinity Capture-MS	FSW = 0.0179	Unknown	60S RIBOSOMAL PROTEIN L35 (RPL35C)
AT4G36050	Predicted Phenotypic Enhancement synthetic growth defect synthetic growth defect Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement synthetic growth defect Affinity Capture-MS Synthetic Lethality	FSW = 0.0441	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G36080	Predicted synthetic growth defect	FSW = 0.1219	Unknown	FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT5G10390	Predicted Affinity Capture-Western	FSW = 0.1068	Unknown	HISTONE H3
AT5G10400	Predicted Affinity Capture-Western	FSW = 0.1388	Unknown	HISTONE H3
AT1G08880	Predicted Affinity Capture-MS	FSW = 0.0725	Unknown	H2AXA DNA BINDING
AT1G15780	Predicted Synthetic Lethality two hybrid	FSW = 0.0604	Unknown	UNKNOWN PROTEIN
AT1G31660	Predicted Affinity Capture-MS	FSW = 0.0107	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G54140	Predicted Synthetic Lethality	FSW = 0.0859	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G80410	Predicted synthetic growth defect	FSW = 0.0187	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT3G14100	Predicted Affinity Capture-MS	FSW = 0.0249	Unknown	OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT3G45630	Predicted Synthetic Lethality	FSW = 0.0429	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G51270	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0445	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT4G22140	Predicted synthetic growth defect	FSW = 0.1155	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G38250	Predicted Phenotypic Enhancement	FSW = 0.0367	Unknown	AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G04800	Predicted Phenotypic Enhancement	FSW = 0.0167	Unknown	40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G13780	Predicted synthetic growth defect	FSW = 0.0292	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G26250	Predicted Phenotypic Suppression	FSW = 0.0182	Unknown	SUGAR TRANSPORTER PUTATIVE
AT5G44740	Predicted biochemical	FSW = 0.0030	Unknown	POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE
AT5G38110	Predicted Phenotypic Suppression Phenotypic Enhancement	FSW = 0.0122	Unknown	ASF1B (ANTI- SILENCING FUNCTION 1B)
AT5G50900	Predicted Phenotypic Suppression	FSW = 0.0314	Unknown	ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
AT2G28820	Predicted interaction prediction	FSW = 0.0139	Unknown	ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
AT4G13650	Predicted Gene fusion method	FSW = 0.0108	Unknown	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT5G19310 - ( homeotic gene regulator putative )

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