Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G63130 - ( RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPase activator/ protein binding )
37 Proteins interacs with AT3G63130| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G26450
   | Experimentalcoimmunoprecipitationtwo hybridsplit-reporter assay | FSW = 0.1463
| Class A:nucleusClass B:plastidplasma membraneClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | UNKNOWN PROTEIN |
| AT4G26455
| Experimentalconfocal microscopysplit-reporter assaycoimmunoprecipitationtwo hybrid | FSW = 0.1214
| Unknown | WIP1 (WPP-DOMAIN INTERACTING PROTEIN 1) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
| AT5G56210
| Experimentalsplit-reporter assayconfocal microscopy | FSW = 0.0806
| Unknown | WIP2 (WPP-DOMAIN INTERACTING PROTEIN 2) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
| AT3G13360
| Experimentalsplit-reporter assay | FSW = 0.0473
| Unknown | WIP3 (WPP-DOMAIN INTERACTING PROTEIN 3) |
| AT5G11390
| Experimentalinteraction detection methodtwo hybridAffinity Capture-Westernaffinity technologytwo hybrid | FSW = 0.0969
| Unknown | UNKNOWN PROTEIN |
| AT3G18710
| Experimentalinteraction detection method | FSW = 0.0444
| Unknown | PUB29 (PLANT U-BOX 29) UBIQUITIN-PROTEIN LIGASE |
| AT1G14850
| Predictedinterologs mapping | FSW = 0.0418
| Class C:plastidplasma membranenucleus | NUP155 NUCLEOCYTOPLASMIC TRANSPORTER |
| AT1G74710
| Predictedsynthetic growth defect | FSW = 0.0063
| Class C:plastidnucleus | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
| AT4G08870
| Predictedinteraction prediction | FSW = 0.0293
| Class C:plastid | ARGINASE PUTATIVE |
| AT4G34740
| Predictedinteraction prediction | FSW = 0.0483
| Class C:plastid | ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2) AMIDOPHOSPHORIBOSYLTRANSFERASE |
| AT1G29900
| PredictedAffinity Capture-MS | FSW = 0.0246
| Class C:plastid | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
| AT5G53480
| PredictedSynthetic Lethality | FSW = 0.0469
| Class C:plastid | IMPORTIN BETA-2 PUTATIVE |
| AT2G44610
| Predictedinteraction predictionEnriched domain pairCo-expression | FSW = 0.0085
| Class C:plasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
| AT1G11680
| PredictedSynthetic Lethality | FSW = 0.0049
| Class C:plasma membrane | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
| AT3G53110
| PredictedSynthetic Lethality | FSW = 0.0258
| Class C:plasma membrane | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
| AT5G20020
| PredictedPhenotypic SuppressionPhenotypic SuppressionEnriched domain pair | FSW = 0.0605
| Class C:nucleus | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT1G51060
| PredictedReconstituted Complex | FSW = 0.0267
| Class C:nucleus | HTA10 DNA BINDING |
| AT5G19310
| Predictedinterologs mappingsynthetic growth defect | FSW = 0.0157
| Class C:nucleus | HOMEOTIC GENE REGULATOR PUTATIVE |
| AT2G37470
| PredictedReconstituted Complex | FSW = 0.0210
| Class C:nucleus | HISTONE H2B PUTATIVE |
| AT4G01370
| Predictedbiochemical | FSW = 0.0039
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
| AT3G19980
| Predictedinterologs mapping | FSW = 0.0056
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G65750
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0138
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
| AT4G13460
| Predictedinterologs mappingSynthetic Lethality | FSW = 0.0504
| Unknown | SUVH9 HISTONE-LYSINE N-METHYLTRANSFERASE/ ZINC ION BINDING |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0035
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT5G63860
| Predictedinterologs mapping | FSW = 0.1012
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT1G07140
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1488
| Unknown | SIRANBP RAN GTPASE BINDING |
| AT3G03110
| PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MSReconstituted Complexinteraction predictionCo-expression | FSW = 0.0671
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
| AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0059
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
| AT1G54560 | Predictedbiochemical | FSW = 0.0052
| Unknown | XIE MOTOR/ PROTEIN BINDING |
| AT2G16570
| PredictedAffinity Capture-MS | FSW = 0.0488
| Unknown | ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1) AMIDOPHOSPHORIBOSYLTRANSFERASE |
| AT3G15970
| PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1556
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
| AT5G10260
| PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
| AT5G55190
| PredictedAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.0703
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT3G46320 | PredictedReconstituted Complex | FSW = 0.0264
| Unknown | HISTONE H4 |
| AT3G53730
| PredictedReconstituted Complex | FSW = 0.0120
| Unknown | HISTONE H4 |
| AT5G50140
| PredictedGene fusion method | FSW = 0.1254
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
| AT5G16420
| PredictedGene fusion method | FSW = 0.0488
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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