Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G15970 - ( Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein )
20 Proteins interacs with AT3G15970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G20020 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.1209
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G63130 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1556
| Unknown | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
AT1G11870 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0136
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT5G16630 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | RAD4 DAMAGED DNA BINDING |
AT5G53480 | Predictedin vitroin vivo | FSW = 0.0483
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT4G26110 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT1G27310 | Predictedinteraction prediction | FSW = 0.1113
| Unknown | NTF2A (NUCLEAR TRANSPORT FACTOR 2A) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT5G17020 | Predictedin vitroin vivoin vitroin vivotwo hybrid | FSW = 0.1441
| Unknown | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
AT5G26710 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT5G63860 | PredictedAffinity Capture-WesternSynthetic Lethalityinteraction prediction | FSW = 0.0740
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0024
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G19000 | Predictedtwo hybrid | FSW = 0.0469
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
AT5G16040 | PredictedAffinity Capture-MSin vitroin vivotwo hybrid | FSW = 0.0229
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G43910 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT5G55190 | Predictedin vitroin vivo | FSW = 0.1401
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G03110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mappingReconstituted Complextwo hybridSynthetic Lethalityinteraction prediction | FSW = 0.0658
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G56150 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT5G09620 | PredictedAffinity Capture-MS | FSW = 0.0462
| Unknown | OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN |
AT5G20600 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT2G39760 | Predictedtwo hybrid | FSW = 0.0714
| Unknown | BPM3 PROTEIN BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454