Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G16040 - ( regulator of chromosome condensation (RCC1) family protein )
107 Proteins interacs with AT5G16040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0115
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT4G38510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1162
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT5G19320 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic SuppressionAffinity Capture-MS | FSW = 0.1311
| Unknown | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT1G76040 | Predictedinterologs mapping | FSW = 0.0037
| Unknown | CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G49010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0266
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G16920 | Predictedtwo hybrid | FSW = 0.0021
| Unknown | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
AT3G26590 | Predictedbiochemical | FSW = 0.0134
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0532
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0664
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G13450 | PredictedAffinity Capture-MS | FSW = 0.0491
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT5G20020 | Predictedin vivoin vivoAffinity Capture-MS | FSW = 0.0237
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G53420 | Predictedtwo hybrid | FSW = 0.0112
| Unknown | PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) WATER CHANNEL |
AT3G20550 | PredictedColocalization | FSW = 0.0260
| Unknown | DDL (DAWDLE) |
AT5G51540 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | METALLOENDOPEPTIDASE |
AT4G35630 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | PSAT O-PHOSPHO-L-SERINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT1G19660 | PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0578
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT5G51820 | Predictedtwo hybrid | FSW = 0.0239
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT5G53460 | Predictedtwo hybrid | FSW = 0.0061
| Unknown | GLT1 GLUTAMATE SYNTHASE (NADH) |
AT3G26650 | PredictedGene fusion method | FSW = 0.0203
| Unknown | GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE/ PROTEIN BINDING |
AT1G10070 | PredictedSynthetic Lethality | FSW = 0.0157
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G31190 | PredictedAffinity Capture-MS | FSW = 0.0436
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT5G49030 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0706
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT2G42590 | Predictedtwo hybrid | FSW = 0.0041
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G23600 | Predictedinterologs mapping | FSW = 0.0277
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G45780 | Predictedtwo hybrid | FSW = 0.0222
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0353
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G77210 | Predictedtwo hybrid | FSW = 0.0145
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G43900 | PredictedSynthetic Rescue | FSW = 0.0161
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT5G57015 | Predictedin vivoin vitro | FSW = 0.0088
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G34450 | Predictedtwo hybrid | FSW = 0.0046
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0336
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G53350 | PredictedGene fusion method | FSW = 0.0092
| Unknown | MYOSIN HEAVY CHAIN-RELATED |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0153
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G58590 | Predictedin vitro | FSW = 0.0421
| Unknown | RANBP1 (RAN BINDING PROTEIN 1) PROTEIN BINDING |
AT1G65440 | PredictedAffinity Capture-MS | FSW = 0.0726
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT4G25340 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G17020 | Predictedin vitro | FSW = 0.0341
| Unknown | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
AT1G72330 | Predictedtwo hybrid | FSW = 0.0253
| Unknown | ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT4G26910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0106
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT2G19980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0651
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G07140 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT5G66020 | Predictedtwo hybrid | FSW = 0.0043
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT2G16700 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) ACTIN BINDING |
AT2G47990 | PredictedPhenotypic Suppression | FSW = 0.0101
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT3G02560 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0260
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7B) |
AT4G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0361
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT5G01160 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | E-CADHERIN BINDING PROTEIN-RELATED |
AT3G15970 | PredictedAffinity Capture-MSin vitroin vivotwo hybrid | FSW = 0.0229
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT4G09760 | Predictedin vivoin vitro | FSW = 0.0191
| Unknown | CHOLINE KINASE PUTATIVE |
AT5G02560 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | HTA12 DNA BINDING |
AT1G07880 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G34580 | Predictedtwo hybridbiochemical | FSW = 0.0284
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G55300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0280
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G74320 | Predictedtwo hybrid | FSW = 0.0316
| Unknown | CHOLINE KINASE PUTATIVE |
AT2G17620 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.0280
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G20280 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G31020 | Predictedtwo hybrid | FSW = 0.0442
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G37670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0526
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT2G40570 | Predictedtwo hybrid | FSW = 0.0317
| Unknown | INITIATOR TRNA PHOSPHORIBOSYL TRANSFERASE FAMILY PROTEIN |
AT2G46710 | PredictedReconstituted Complex | FSW = 0.0980
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT3G21460 | Predictedtwo hybrid | FSW = 0.0251
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G43250 | PredictedAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-WesternSynthetic Lethalitysynthetic growth defectinterologs mappingReconstituted ComplexAffinity Capture-Westerntwo hybridCo-crystal Structure | FSW = 0.0216
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT3G57470 | Predictedtwo hybrid | FSW = 0.0440
| Unknown | PEPTIDASE M16 FAMILY PROTEIN / INSULINASE FAMILY PROTEIN |
AT4G10570 | Predictedtwo hybrid | FSW = 0.0091
| Unknown | UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9) CYSTEINE-TYPE ENDOPEPTIDASE/ UBIQUITIN THIOLESTERASE |
AT4G13020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0401
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G21800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0294
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G32850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1016
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G04510 | Predictedtwo hybrid | FSW = 0.0071
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
AT5G10830 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT5G15070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexCo-purificationtwo hybrid | FSW = 0.1886
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT1G02730 | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G07830 | PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | RIBOSOMAL PROTEIN L29 FAMILY PROTEIN |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G10210 | PredictedAffinity Capture-MS | FSW = 0.0423
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G30825 | PredictedAffinity Capture-MS | FSW = 0.0487
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
AT1G44820 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT2G20635 | PredictedSynthetic Lethality | FSW = 0.0239
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G35390 | PredictedAffinity Capture-Western | FSW = 0.0317
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G02320 | PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT3G08650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1356
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT4G00810 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G12440 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | ADENINE PHOSPHORIBOSYLTRANSFERASE PUTATIVE |
AT4G20870 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0087
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G20340 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT5G40530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1099
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT5G47080 | PredictedAffinity Capture-MS | FSW = 0.0030
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT5G60870 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0753
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G19510 | Predictedinterologs mapping | FSW = 0.0484
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT5G42720 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G43380 | Predictedtwo hybrid | FSW = 0.0081
| Unknown | TOPP6 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G45190 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G46030 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | UNKNOWN PROTEIN |
AT5G48710 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | UBIQUITIN-RELATED |
AT5G52590 | Predictedtwo hybrid | FSW = 0.0099
| Unknown | UBIQUITIN-RELATED |
AT5G61140 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G65190 | PredictedGene fusion method | FSW = 0.0194
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G45240 | PredictedGene fusion method | FSW = 0.0113
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G17640 | PredictedGene fusion method | FSW = 0.0645
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT1G16330 | PredictedGene fusion method | FSW = 0.0120
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G30020 | PredictedGene fusion method | FSW = 0.0092
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G64710 | PredictedGene fusion method | FSW = 0.0098
| Unknown | ALCOHOL DEHYDROGENASE PUTATIVE |
AT5G42450 | PredictedGene fusion method | FSW = 0.0405
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454