Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61140 - ( DEAD box RNA helicase putative )
9 Proteins interacs with AT5G61140Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0131
| Unknown | UNKNOWN PROTEIN |
AT1G20960 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0342
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G42270 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1569
| Unknown | U5 SMALL NUCLEAR RIBONUCLEOPROTEIN HELICASE PUTATIVE |
AT3G16220 | Predictedin vivotwo hybrid | FSW = 0.1131
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN REGULATION OF TRANSCRIPTION LOCATED IN CYTOPLASM EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PREDICTED EUKARYOTIC LIGT (INTERPROIPR009210) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA BINDING / CATALYTIC (TAIRAT3G162301) HAS 197 BLAST HITS TO 196 PROTEINS IN 65 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 146 FUNGI - 9 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 24 (SOURCE NCBI BLINK) |
AT3G47610 | Predictedtwo hybridin vivo | FSW = 0.0211
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT2G40790 | Predictedtwo hybrid | FSW = 0.1426
| Unknown | ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT3G46960 | PredictedPhenotypic EnhancementEnriched domain pairCo-expression | FSW = 0.0333
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT5G16040 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT1G27750 | Predictedin vivo | FSW = 0.1641
| Unknown | NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454