Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G45240 - ( GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) kinase )

72 Proteins interacs with AT3G45240
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G17360

Predicted

synthetic growth defect

FSW = 0.0848

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G11260

Predicted

synthetic growth defect

FSW = 0.0115

Unknown

STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT2G45170

Predicted

Phenotypic Enhancement

FSW = 0.1025

Unknown

ATATG8E MICROTUBULE BINDING
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0311

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G74560

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1877

Unknown

NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT3G22890

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2228

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT5G09660

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.2940

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT1G74710

Predicted

synthetic growth defect

FSW = 0.1686

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT3G58610

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2647

Unknown

KETOL-ACID REDUCTOISOMERASE
AT4G22930

Predicted

two hybrid

FSW = 0.0131

Unknown

PYR4 (PYRIMIDIN 4) DIHYDROOROTASE/ HYDROLASE/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN CYCLIC AMIDES
AT1G64190

Predicted

Phenotypic Enhancement

FSW = 0.1475

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT1G48860

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1670

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT3G48750

Predicted

biochemical

FSW = 0.0056

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G04750

Predicted

synthetic growth defect

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2410

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT5G26340

Predicted

Affinity Capture-MS

FSW = 0.0365

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G20970Predicted

interologs mapping

FSW = 0.0132

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK)
AT1G21700

Predicted

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1823

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT2G36170Predicted

Synthetic Lethality

FSW = 0.0827

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT1G28460

Predicted

Phenotypic Suppression

FSW = 0.1021

Unknown

AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR
AT1G55520

Predicted

synthetic growth defect

FSW = 0.0112

Unknown

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT1G64880

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1856

Unknown

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT5G24090

Predicted

Affinity Capture-Western

Synthetic Lethality

Colocalization

FSW = 0.2449

Unknown

ACIDIC ENDOCHITINASE (CHIB1)
AT2G05170

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.0721

Unknown

ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT4G39200

Predicted

Synthetic Lethality

FSW = 0.1655

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT1G62800

Predicted

Phenotypic Enhancement

FSW = 0.2296

Unknown

ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT3G13900

Predicted

Phenotypic Enhancement

FSW = 0.1141

Unknown

ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT1G05180

Predicted

synthetic growth defect

FSW = 0.1670

Unknown

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT1G13580

Predicted

Phenotypic Enhancement

FSW = 0.0799

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G21370

Predicted

synthetic growth defect

FSW = 0.1467

Unknown

UNKNOWN PROTEIN
AT1G23460

Predicted

synthetic growth defect

FSW = 0.1156

Unknown

POLYGALACTURONASE
AT1G25155Predicted

synthetic growth defect

FSW = 0.1986

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G27040

Predicted

Phenotypic Enhancement

FSW = 0.0906

Unknown

NITRATE TRANSPORTER PUTATIVE
AT1G27080

Predicted

Phenotypic Enhancement

FSW = 0.0771

Unknown

NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT1G31170

Predicted

Affinity Capture-MS

FSW = 0.0455

Unknown

SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G35350

Predicted

synthetic growth defect

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3437

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G47830

Predicted

synthetic growth defect

FSW = 0.3045

Unknown

CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G60680

Predicted

synthetic growth defect

FSW = 0.1414

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G66590

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

synthetic growth defect

FSW = 0.2854

Unknown

COX19 FAMILY PROTEIN
AT1G78770

Predicted

Phenotypic Suppression

synthetic growth defect

FSW = 0.1768

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT2G32050

Predicted

Synthetic Lethality

FSW = 0.0988

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT2G34250

Predicted

Affinity Capture-MS

FSW = 0.0686

Unknown

PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT2G38600

Predicted

Phenotypic Enhancement

FSW = 0.0213

Unknown

ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT2G40010

Predicted

Phenotypic Enhancement

FSW = 0.0136

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT3G02320

Predicted

synthetic growth defect

FSW = 0.2793

Unknown

RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE
AT3G18660

Predicted

synthetic growth defect

FSW = 0.1154

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G22290

Predicted

synthetic growth defect

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3741

Unknown

UNKNOWN PROTEIN
AT3G27440

Predicted

synthetic growth defect

FSW = 0.0880

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G11510

Predicted

synthetic growth defect

FSW = 0.1582

Unknown

DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G55060

Predicted

Synthetic Rescue

Synthetic Lethality

FSW = 0.1365

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G74810

Predicted

Synthetic Lethality

FSW = 0.1705

Unknown

BOR5 ANION EXCHANGER
AT2G40930

Predicted

Affinity Capture-MS

FSW = 0.1317

Unknown

UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) UBIQUITIN-SPECIFIC PROTEASE
AT3G47610

Predicted

Synthetic Lethality

FSW = 0.1826

Unknown

TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT4G21490

Predicted

synthetic growth defect

FSW = 0.3191

Unknown

NDB3 NADH DEHYDROGENASE
AT4G27130

Predicted

synthetic growth defect

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3900

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G27960

Predicted

Synthetic Lethality

FSW = 0.0510

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT4G34370

Predicted

two hybrid

Phenotypic Enhancement

FSW = 0.1025

Unknown

ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT5G16980

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.3437

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G17860

Predicted

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.3393

Unknown

CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT4G21560

Predicted

synthetic growth defect

FSW = 0.0378

Unknown

VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1) TRANSPORTER
AT4G29580

Predicted

Synthetic Lethality

FSW = 0.2485

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT4G37680

Predicted

Affinity Capture-MS

FSW = 0.0467

Unknown

HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR
AT5G01770

Predicted

Phenotypic Enhancement

FSW = 0.2250

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G05070

Predicted

Phenotypic Enhancement

FSW = 0.0237

Unknown

ZINC ION BINDING
AT5G26250

Predicted

Synthetic Lethality

FSW = 0.0678

Unknown

SUGAR TRANSPORTER PUTATIVE
AT4G16360

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.0344

Unknown

AMP-ACTIVATED PROTEIN KINASE
AT3G01090

Predicted

biochemical

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

biochemical

co-fractionation

Co-fractionation

FSW = 0.0257

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT1G09020

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0264

Unknown

SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT5G67100

Predicted

interologs mapping

FSW = 0.0197

Unknown

ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE
AT3G54630

Predicted

two hybrid

FSW = 0.0047

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK)
AT5G60550

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1700

Unknown

GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE
AT5G16040

Predicted

Gene fusion method

FSW = 0.0113

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT3G17640

Predicted

Gene fusion method

FSW = 0.0282

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454