Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G45240 - ( GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) kinase )
72 Proteins interacs with AT3G45240Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | Predictedsynthetic growth defect | FSW = 0.0848
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT1G11260 | Predictedsynthetic growth defect | FSW = 0.0115
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G45170 | PredictedPhenotypic Enhancement | FSW = 0.1025
| Unknown | ATATG8E MICROTUBULE BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0311
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G74560 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1877
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT3G22890 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2228
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G09660 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2940
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.1686
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT3G58610 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2647
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT4G22930 | Predictedtwo hybrid | FSW = 0.0131
| Unknown | PYR4 (PYRIMIDIN 4) DIHYDROOROTASE/ HYDROLASE/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN CYCLIC AMIDES |
AT1G64190 | PredictedPhenotypic Enhancement | FSW = 0.1475
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT1G48860 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1670
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT3G48750 | Predictedbiochemical | FSW = 0.0056
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G04750 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.2410
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT5G26340 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G20970 | Predictedinterologs mapping | FSW = 0.0132
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT1G21700 | Predictedsynthetic growth defectsynthetic growth defectPhenotypic Enhancement | FSW = 0.1823
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT2G36170 | PredictedSynthetic Lethality | FSW = 0.0827
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.1021
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G55520 | Predictedsynthetic growth defect | FSW = 0.0112
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT1G64880 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1856
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT5G24090 | PredictedAffinity Capture-WesternSynthetic LethalityColocalization | FSW = 0.2449
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT2G05170 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0721
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT4G39200 | PredictedSynthetic Lethality | FSW = 0.1655
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G62800 | PredictedPhenotypic Enhancement | FSW = 0.2296
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G13900 | PredictedPhenotypic Enhancement | FSW = 0.1141
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT1G05180 | Predictedsynthetic growth defect | FSW = 0.1670
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G13580 | PredictedPhenotypic Enhancement | FSW = 0.0799
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G21370 | Predictedsynthetic growth defect | FSW = 0.1467
| Unknown | UNKNOWN PROTEIN |
AT1G23460 | Predictedsynthetic growth defect | FSW = 0.1156
| Unknown | POLYGALACTURONASE |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.1986
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G27040 | PredictedPhenotypic Enhancement | FSW = 0.0906
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G27080 | PredictedPhenotypic Enhancement | FSW = 0.0771
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G35350 | Predictedsynthetic growth defectSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3437
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G47830 | Predictedsynthetic growth defect | FSW = 0.3045
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G60680 | Predictedsynthetic growth defect | FSW = 0.1414
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G66590 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.2854
| Unknown | COX19 FAMILY PROTEIN |
AT1G78770 | PredictedPhenotypic Suppressionsynthetic growth defect | FSW = 0.1768
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G32050 | PredictedSynthetic Lethality | FSW = 0.0988
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.0686
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G38600 | PredictedPhenotypic Enhancement | FSW = 0.0213
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT2G40010 | PredictedPhenotypic Enhancement | FSW = 0.0136
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT3G02320 | Predictedsynthetic growth defect | FSW = 0.2793
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT3G18660 | Predictedsynthetic growth defect | FSW = 0.1154
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22290 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.3741
| Unknown | UNKNOWN PROTEIN |
AT3G27440 | Predictedsynthetic growth defect | FSW = 0.0880
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.1582
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G55060 | PredictedSynthetic RescueSynthetic Lethality | FSW = 0.1365
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G74810 | PredictedSynthetic Lethality | FSW = 0.1705
| Unknown | BOR5 ANION EXCHANGER |
AT2G40930 | PredictedAffinity Capture-MS | FSW = 0.1317
| Unknown | UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) UBIQUITIN-SPECIFIC PROTEASE |
AT3G47610 | PredictedSynthetic Lethality | FSW = 0.1826
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G21490 | Predictedsynthetic growth defect | FSW = 0.3191
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27130 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.3900
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G27960 | PredictedSynthetic Lethality | FSW = 0.0510
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT4G34370 | Predictedtwo hybridPhenotypic Enhancement | FSW = 0.1025
| Unknown | ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING |
AT5G16980 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3437
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G17860 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3393
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT4G21560 | Predictedsynthetic growth defect | FSW = 0.0378
| Unknown | VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1) TRANSPORTER |
AT4G29580 | PredictedSynthetic Lethality | FSW = 0.2485
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0467
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.2250
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G05070 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Unknown | ZINC ION BINDING |
AT5G26250 | PredictedSynthetic Lethality | FSW = 0.0678
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G16360 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0344
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT3G01090 | PredictedbiochemicalAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernbiochemicalco-fractionationCo-fractionation | FSW = 0.0257
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT1G09020 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0264
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT5G67100 | Predictedinterologs mapping | FSW = 0.0197
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT3G54630 | Predictedtwo hybrid | FSW = 0.0047
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT5G60550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1700
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT5G16040 | PredictedGene fusion method | FSW = 0.0113
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT3G17640 | PredictedGene fusion method | FSW = 0.0282
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454