Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54630 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 11 plant structures EXPRESSED DURING 6 growth stages CONTAINS InterPro DOMAIN/s Kinetochore protein Ndc80 (InterProIPR005550) Has 19800 Blast hits to 12108 proteins in 845 species Archae - 345 Bacteria - 1709 Metazoa - 11031 Fungi - 1499 Plants - 797 Viruses - 39 Other Eukaryotes - 4380 (source NCBI BLink) )
42 Proteins interacs with AT3G54630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G61000 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Westernco-fractionationCo-fractionationinterologs mappingSynthetic Lethalityinteraction prediction | FSW = 0.0439
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
AT1G14010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2604
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G31780 | Predictedtwo hybridinteraction prediction | FSW = 0.0121
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT3G09820 | PredictedAffinity Capture-MS | FSW = 0.2143
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G31190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3717
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT5G49030 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1829
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G54670 | Predictedinterologs mappingin vitrotwo hybridinteraction predictionCo-expression | FSW = 0.0134
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT5G23630 | Predictedinteraction prediction | FSW = 0.0132
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT4G10450 | Predictedtwo hybrid | FSW = 0.0187
| Unknown | 60S RIBOSOMAL PROTEIN L9 (RPL90D) |
AT4G08690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3214
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.2396
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G45380 | PredictedAffinity Capture-MS | FSW = 0.3010
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT1G70580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0560
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3476
| Unknown | UNKNOWN PROTEIN |
AT1G30810 | PredictedAffinity Capture-MS | FSW = 0.3542
| Unknown | TRANSCRIPTION FACTOR |
AT1G55750 | Predictedtwo hybridinteraction prediction | FSW = 0.0135
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G08980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1939
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G25980 | Predictedin vivoAffinity Capture-MSCo-expression | FSW = 0.0092
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G01760 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | RNA BINDING / ADENOSINE DEAMINASE |
AT5G04430 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING |
AT3G48210 | PredictedAffinity Capture-WesternAffinity Capture-MSReconstituted Complexin vitroin vivo | FSW = 0.0593
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 10 PLANT STRUCTURES EXPRESSED DURING 4 ANTHESIS F MATURE EMBRYO STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S KINETOCHORE-NDC80 COMPLEX SUBUNIT SPC25 (INTERPROIPR013255) HAS 142 BLAST HITS TO 142 PROTEINS IN 51 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 61 FUNGI - 34 PLANTS - 34 VIRUSES - 0 OTHER EUKARYOTES - 11 (SOURCE NCBI BLINK) |
AT3G12280 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0072
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G28290 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0239
| Unknown | ATNEK3 (NIMA-RELATED KINASE3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G49880 | Predictedtwo hybridin vivoAffinity Capture-MSCo-expression | FSW = 0.0522
| Unknown | MITOTIC CHECKPOINT FAMILY PROTEIN |
AT5G60570 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT1G02730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3425
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2066
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3403
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT1G34460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0490
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2529
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3427
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2702
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G43250 | PredictedAffinity Capture-MS | FSW = 0.0522
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT3G44590 | Predictedtwo hybrid | FSW = 0.0119
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT3G47290 | Predictedtwo hybrid | FSW = 0.0087
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G53880 | PredictedCo-purification | FSW = 0.1675
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G07950 | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | UNKNOWN PROTEIN |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0818
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G47460 | PredictedAffinity Capture-Westerninterologs mappingtwo hybridinteraction predictionCo-expression | FSW = 0.0270
| Unknown | ATSMC2 TRANSPORTER |
AT4G01400 | Predictedtwo hybridinteraction prediction | FSW = 0.0435
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COG4 TRANSPORT (INTERPROIPR013167) PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G461001) HAS 11639 BLAST HITS TO 3936 PROTEINS IN 180 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 206 FUNGI - 141 PLANTS - 11004 VIRUSES - 0 OTHER EUKARYOTES - 286 (SOURCE NCBI BLINK) |
AT3G45240 | Predictedtwo hybrid | FSW = 0.0047
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT2G32850 | Predictedinteraction prediction | FSW = 0.0060
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454