Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54630 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 11 plant structures EXPRESSED DURING 6 growth stages CONTAINS InterPro DOMAIN/s Kinetochore protein Ndc80 (InterProIPR005550) Has 19800 Blast hits to 12108 proteins in 845 species Archae - 345 Bacteria - 1709 Metazoa - 11031 Fungi - 1499 Plants - 797 Viruses - 39 Other Eukaryotes - 4380 (source NCBI BLink) )

42 Proteins interacs with AT3G54630
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G61000

Predicted

interaction prediction

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

co-fractionation

Co-fractionation

interologs mapping

Synthetic Lethality

interaction prediction

FSW = 0.0439

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK)
AT1G14010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2604

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G31780

Predicted

two hybrid

interaction prediction

FSW = 0.0121

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT3G09820

Predicted

Affinity Capture-MS

FSW = 0.2143

Unknown

ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING
AT1G31190

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3717

Unknown

IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE
AT5G49030

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

FSW = 0.1829

Unknown

OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G54670

Predicted

interologs mapping

in vitro

two hybrid

interaction prediction

Co-expression

FSW = 0.0134

Unknown

TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT5G23630

Predicted

interaction prediction

FSW = 0.0132

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT4G10450

Predicted

two hybrid

FSW = 0.0187

Unknown

60S RIBOSOMAL PROTEIN L9 (RPL90D)
AT4G08690

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3214

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G04720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

FSW = 0.2396

Unknown

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G45380

Predicted

Affinity Capture-MS

FSW = 0.3010

Unknown

SODIUMSOLUTE SYMPORTER FAMILY PROTEIN
AT1G70580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0560

Unknown

AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE
AT5G59960

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3476

Unknown

UNKNOWN PROTEIN
AT1G30810

Predicted

Affinity Capture-MS

FSW = 0.3542

Unknown

TRANSCRIPTION FACTOR
AT1G55750

Predicted

two hybrid

interaction prediction

FSW = 0.0135

Unknown

TRANSCRIPTION FACTOR-RELATED
AT3G08980

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1939

Unknown

SIGNAL PEPTIDASE I FAMILY PROTEIN
AT3G25980

Predicted

in vivo

Affinity Capture-MS

Co-expression

FSW = 0.0092

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT1G01760

Predicted

two hybrid

FSW = 0.0395

Unknown

RNA BINDING / ADENOSINE DEAMINASE
AT5G04430

Predicted

two hybrid

FSW = 0.0132

Unknown

BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING
AT3G48210

Predicted

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

in vitro

in vivo

FSW = 0.0593

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 10 PLANT STRUCTURES EXPRESSED DURING 4 ANTHESIS F MATURE EMBRYO STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S KINETOCHORE-NDC80 COMPLEX SUBUNIT SPC25 (INTERPROIPR013255) HAS 142 BLAST HITS TO 142 PROTEINS IN 51 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 61 FUNGI - 34 PLANTS - 34 VIRUSES - 0 OTHER EUKARYOTES - 11 (SOURCE NCBI BLINK)
AT3G12280

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.0072

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT5G28290

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0239

Unknown

ATNEK3 (NIMA-RELATED KINASE3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G49880

Predicted

two hybrid

in vivo

Affinity Capture-MS

Co-expression

FSW = 0.0522

Unknown

MITOTIC CHECKPOINT FAMILY PROTEIN
AT5G60570

Predicted

two hybrid

FSW = 0.0198

Unknown

KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT1G02730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3425

Unknown

ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE
AT1G06790

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2066

Unknown

RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G10940

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3403

Unknown

SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE
AT1G34460Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0490

Unknown

CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G20410

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2529

Unknown

ACTIVATING SIGNAL COINTEGRATOR-RELATED
AT2G29940

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3427

Unknown

PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G05760

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2702

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G43250

Predicted

Affinity Capture-MS

FSW = 0.0522

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT3G44590

Predicted

two hybrid

FSW = 0.0119

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D)
AT3G47290

Predicted

two hybrid

FSW = 0.0087

Unknown

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
AT3G53880

Predicted

Co-purification

FSW = 0.1675

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT5G07950

Predicted

Affinity Capture-MS

FSW = 0.0178

Unknown

UNKNOWN PROTEIN
AT5G06150

Predicted

Affinity Capture-MS

FSW = 0.0818

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G47460

Predicted

Affinity Capture-Western

interologs mapping

two hybrid

interaction prediction

Co-expression

FSW = 0.0270

Unknown

ATSMC2 TRANSPORTER
AT4G01400

Predicted

two hybrid

interaction prediction

FSW = 0.0435

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COG4 TRANSPORT (INTERPROIPR013167) PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G461001) HAS 11639 BLAST HITS TO 3936 PROTEINS IN 180 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 206 FUNGI - 141 PLANTS - 11004 VIRUSES - 0 OTHER EUKARYOTES - 286 (SOURCE NCBI BLINK)
AT3G45240

Predicted

two hybrid

FSW = 0.0047

Unknown

GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE
AT2G32850

Predicted

interaction prediction

FSW = 0.0060

Unknown

PROTEIN KINASE FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454