Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G49880 - ( mitotic checkpoint family protein )
11 Proteins interacs with AT5G49880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16000 | PredictedGene fusion method | FSW = 0.0656
| Unknown | MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1) DNA BINDING |
AT4G38130 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0246
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT3G25980 | Predictedtwo hybridin vivoin vitroAffinity Capture-MSReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.0163
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT3G53760 | Predictedtwo hybrid | FSW = 0.1262
| Unknown | TUBULIN FAMILY PROTEIN |
AT1G18660 | Predictedtwo hybridtwo hybrid | FSW = 0.0368
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT2G40660 | Predictedtwo hybrid | FSW = 0.1262
| Unknown | TRNA-BINDING REGION DOMAIN-CONTAINING PROTEIN |
AT5G49400 | Predictedtwo hybridtwo hybrid | FSW = 0.1641
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G07790 | Predictedtwo hybridtwo hybrid | FSW = 0.0356
| Unknown | DGCR14-RELATED |
AT1G70060 | Predictedin vitro | FSW = 0.1170
| Unknown | SNL4 (SIN3-LIKE 4) |
AT3G54630 | Predictedtwo hybridin vivoAffinity Capture-MSCo-expression | FSW = 0.0522
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT5G15020 | Predictedtwo hybridin vitroin vitroin vivoin vitroin vivotwo hybrid | FSW = 0.0395
| Unknown | SNL2 (SIN3-LIKE 2) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454